PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG047480.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LSD | ||||||||
Protein Properties | Length: 146aa MW: 14992.5 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.1 | 3.3e-14 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1BG047480.15 30 CSGCRNLLMYPAGATSVCCAVCSTV 54 ***********************99 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.9e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1BG047480.15 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP | |||||||
3 | zf-LSD1 | 38.3 | 2.2e-12 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V TRIDC1BG047480.15 107 CGSCRMLLMYQYGARSVKCAVCSFV 131 **********************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MPVPLAPYPT PPVPFTPPAP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGSC RMLLMYQYGA 120 RSVKCAVCSF VTSVGASSGA EQKPSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-59 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG047480.15 |