PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG033780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 887aa MW: 94242.7 Da PI: 7.1021 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.3e-06 | 867 | 886 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1BG033780.2 867 ICK-YYENGHCWKGPSCSFVH 886 799.6666************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 887 aa Download sequence |
MLFCLQLEFL ISELLFSHLP NSIGLIEGYL YEENTIFCDR HLMEINNFLL FSSFLYFVLH 60 KMIWWKPSFI FKPELSFSVL KMLHVHLSCH IISSNLCLAF FLHKIVDLTI NRNGPGLLFP 120 GREGTESNAV QYLSQKCSDA SRHSSLNLPM EGVTHIPGAG SITNLQAANG WNVPRPRIDL 180 NNTAGDAASV PSSGVVSSDT EPEKVWHYKD PSGNVQGPFT LSQLSKWTTY FPSGMKIWLT 240 FESEENSLLL TEVLSTQQKD IIQPTPVINN NKSAWAGSGQ DRINPSMTGN ITSPIGYNVG 300 KTKEIMNLQK PCPPDASNAS VNQLFEPKID SVLSPGTQDQ YPSPNPKFER KQPVMNKSGS 360 TSVAPEDSAT KETQTSCVEE RDLKDGGCVT QTAPLKGDAT SAKRDNITVS SVSDAGVCDV 420 LGSLTEPNCG TYNVHAGMPL ENVNPASAEE ERPQCSSPIA LSPWGEPSYY QGGAVDSALW 480 GVQDDPSNDI WSLSSPTPAL QPSSDLGADG KDTSCILEEA VVARGNSAVG EIPPTPEEKM 540 EKGNPSASTD CGVPGQVKLK PSAALLNSSL KSTEASGGQP LGSSLEGSTK ASGRQPVGSF 600 LDGNTKVSGR QASGQFLEGS TKASGWQSGS SLETSTKGSG WGSSVDGSTK GSGWGSSVDG 660 STKGSGRGLS LEVNTKGSGW GSSLEGGTKG SGWGSSLEGG TKGSGWGSSL EGSTQASGWL 720 RSSSSPEGRK TPGRHSSARE SSKVNFKSGS QNRNSSSGHQ TTPTAKSSAE AQRRQGSTNS 780 NSAGWGEAPG SNKSWHPSSG SASRGSQSNQ HHDRHSHGNE SRRGSYQGND SRPGSSNHSR 840 RSSDHRQDHG SGMSSRSSSR GQSQRGICKY YENGHCWKGP SCSFVHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 1e-14 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG033780.2 |