PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC1BG013910.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 344aa MW: 38509 Da PI: 7.861

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG013910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	7	52	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT eEd ll v+++G g+Wk Ia +++ gR++kqc++rw + TRIDC1BG013910.1 7 KGSWTVEEDTLLRAKVHEFGIGNWKNIAMYLP-GRSGKQCRERWTNQ 52 799***************************.*********985 PP
2	Myb_DNA-binding	39	1.9e-12	62	101	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT Ed +l+++++ +G++ W+ Iar + gR ++ +k++++ TRIDC1BG013910.1 62 WTDAEDMKLIELHQTWGNH-WSVIARLLS-GRPANTIKNHYN 101 *****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
QRLRQFKGSW TVEEDTLLRA KVHEFGIGNW KNIAMYLPGR SGKQCRERWT NQLDPNIKTK 60 IWTDAEDMKL IELHQTWGNH WSVIARLLSG RPANTIKNHY NATKRSLNSK RQLKKRNSEQ 120 PPPGQLSRLA KYIRSLEPHT GSPTETPPVS PLYHDQEHGG RMGMADRDTA VIITPTMQAH 180 QTYPNPAMTG MYYHPNPTNM QYWAPDLNVA DGQNEGYSYY IPPNGHLNHH LSYGLSPAQM 240 VCEQDIQQVP DGSMSMSVFT GQHTLPASNL KAVAEMHRHS FANNQLGNMG GGAGNWSYYY 300 GMDVAGPSNP AGGSGSGNDP DDIDVVQMAS REFAPQDREV VTLN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

QRLRQFKGSW TVEEDTLLRA KVHEFGIGNW KNIAMYLPGR SGKQCRERWT NQLDPNIKTK  60
IWTDAEDMKL IELHQTWGNH WSVIARLLSG RPANTIKNHY NATKRSLNSK RQLKKRNSEQ  120
PPPGQLSRLA KYIRSLEPHT GSPTETPPVS PLYHDQEHGG RMGMADRDTA VIITPTMQAH  180
QTYPNPAMTG MYYHPNPTNM QYWAPDLNVA DGQNEGYSYY IPPNGHLNHH LSYGLSPAQM  240
VCEQDIQQVP DGSMSMSVFT GQHTLPASNL KAVAEMHRHS FANNQLGNMG GGAGNWSYYY  300
GMDVAGPSNP AGGSGSGNDP DDIDVVQMAS REFAPQDREV VTLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-36	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG013910.1