PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1AG054700.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 364aa MW: 39470.6 Da PI: 10.2532

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG054700.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.6	3.1e-13	61	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++aa+++++g TRIDC1AG054700.2 61 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 109 89**9888.8*****......44******99***********98 PP
2	B3	96.4	1.8e-30	179	277	1	88
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h +g + ++ l + d g++W+++++y+++s++yvltkGW++Fvk++gL +gD vv TRIDC1AG054700.2 179 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagtavSG-ECKGALLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVV 270 89*************************88888777533.337889****************************************** PP EEE-SSS CS B3 82 Fkldgrs 88 F+++ + TRIDC1AG054700.2 271 FYRSASG 277 66433 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
RSCLMEDVSS GASTGNKASA VPAAPATKPL QRVGSGASAV MDAPEPGAEA DSGRGGRLPS 60 SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLV 120 ESDADDAAEL RFLAARSKAE VVDMLRKHIY PDELAQHKRA FLASAASSPT SSSRREHLFD 180 KTVTPSDVGK LNRLVIPKQH AEKHFPLQLP SAGTAVSGEC KGALLNFDDA AGKVWRFRYS 240 YWNSSQSYVL TKGWSRFVKE KGLHAGDAVV FYRSASGNNQ FFIDCKLRSM TTTTTFVNAT 300 AATTSPAPVM RAVRLFGVDL LTAPALRHAP EHEDYGMAKT NKRFVDASVA AATPAHAVWK 360 KRCV

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

RSCLMEDVSS GASTGNKASA VPAAPATKPL QRVGSGASAV MDAPEPGAEA DSGRGGRLPS  60
SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGEAEAARAY DAAAQRFRGR DAVTNFRPLV  120
ESDADDAAEL RFLAARSKAE VVDMLRKHIY PDELAQHKRA FLASAASSPT SSSRREHLFD  180
KTVTPSDVGK LNRLVIPKQH AEKHFPLQLP SAGTAVSGEC KGALLNFDDA AGKVWRFRYS  240
YWNSSQSYVL TKGWSRFVKE KGLHAGDAVV FYRSASGNNQ FFIDCKLRSM TTTTTFVNAT  300
AATTSPAPVM RAVRLFGVDL LTAPALRHAP EHEDYGMAKT NKRFVDASVA AATPAHAVWK  360
KRCV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-104	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG054700.2