PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC1AG041580.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 85aa MW: 8518.03 Da PI: 7.6904

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG041580.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.4	1.3e-14	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1AG041580.5 30 CSGCRNLLMYPAGATSVCCAVCSTV 54 ***********************99 PP
2	zf-LSD1	31.9	2.2e-10	69	85	1	17
zf-LSD1 1 CggCrtlLsYPrGApsV 17 CggC+tlL+Y rGA+sV TRIDC1AG041580.5 69 CGGCHTLLMYIRGATSV 85 ****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence
PVPLAPYPTP PVPFTPPAPN AAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP 60 GTEMAQLVCG GCHTLLMYIR GATSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	9e-23	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG041580.5