PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC1AG041580.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 143aa MW: 14809.3 Da PI: 8.0712

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG041580.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.2	3.2e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV TRIDC1AG041580.3 27 CSGCRNLLMYPAGATSVCCAVCSTV 51 ***********************99 PP
2	zf-LSD1	46.8	4.7e-15	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV TRIDC1AG041580.3 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP
3	zf-LSD1	38.4	2.1e-12	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V TRIDC1AG041580.3 104 CGSCRMLLMYQYGARSVKCAVCSFV 128 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MPVPLAPYPT PPVPFTPPAR AQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGSCRML LMYQYGARSV 120 KCAVCSFVTS VGASSGAEQK PSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-59	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1AG041580.3