PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1AG038160.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 687aa MW: 75904.2 Da PI: 7.536 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 111.8 | 4e-35 | 33 | 108 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1AG038160.5 33 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 108 6************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence |
RAASRGSSGA VVKTGGAGGG SGVAGRGGAA EMRCQVPGCE ADIRELKGYH KRHRVCLRCA 60 HSSAVMIDGV QKRYCQQCGK FHILLDFDED KRSCRRKLER HNKRRRRKPD SKGTLEKEID 120 EQLDLSADGS GSGEIREENI DGASCDMLET VLSNKVLDRE TPMGSEDALS SPTCTQLSLQ 180 NDRSKSIVTF AASAEACLGA KQENAKLTNS PVHDSKSAYS SSCPTGRISF KLYDWNPAEF 240 PRRLRNQLSE DTANLVRNLV NAPSSLLLGK GAFFVHANNT IFQVLKDGAT LMSTRLEVQA 300 PRIHCVHPTW FEAGKPIELL LCGSSLDQPK FRSLLSFDGE YLKHDCCRLT SRETFGCVKN 360 GASTFDSHHE VFRINITQTK PDTHGPGFVE VENVFGLSNF VPILFCSKQL CFELERIQDA 420 LCGSSKYKSA NGEFPGITSD PCEHWKLQQT AMSGFLIEIG WLIKKPSPDE FKKLLSKTNV 480 ERWICVLEFL IQNNFTNVLE MIVKSSDNII GSEILSNLES GRLEHHVTAF VGYIRHARII 540 VDQRAKHNEE TQLQTRWCGD SVSDQPSLGT SVPLGKENVT DSDDFCLPST NAECEEEVSV 600 PLVTNEAVSH RQCRAPEMNA RWLNPALVAP FPSGMMRTRL VATVAVAAIL CFTACVAVFH 660 PHRVGVLGAP VKRYLFSDCP PWHHSGC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 109 | KRSCRRKLERHNKRRRRKP |
2 | 95 | 107 | RRKLERHNKRRRR |
3 | 102 | 109 | NKRRRRKP |
4 | 103 | 108 | KRRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 1e-101 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1AG038160.5 |