PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC1AG027190.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 828aa MW: 86633.2 Da PI: 7.6333

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1AG027190.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.7e-06	808	827	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1AG027190.4 808 ICK-YYENGHCWKGPSCSFVH 827 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence
MKIWLTFESE ENSLLLTEVL STQKKDIIQP TPVINNNKSA WAGSGQDRIN PSMTGNITSP 60 IGYNVVYSSG LPSQSSDHPP LRRESPNFMG EALPSTTCWE PLASSVQIQH QANYASTIPS 120 FAGSYRSTGP HGDGVPREKI GEHNNRQETG GLCSPTPAPK IHNSQSNMKP ESCSRSNLVD 180 GRESNSALGI PSQSRAPACG AQSTSFTCTS SSSKTKEIMN LQKPCPPDAS NASVNQLFEP 240 KIDSVLSPGT QDQYPSPNPK FERKQPVMNK SGSTSVAPED SATKAYDHSS IAFVSETSGP 300 PSSKFVGLQL LKETQTSCVE ERDLKDGGCV TQTAPLKGDA TSAKRDNITV SSVSDAGVCD 360 VLGSLTEPNC GTYNVHAGMP LENVTPASAE EERPQCSSPI ALSPWGEPSY YQGGAVDSAL 420 WGVQDDPSND MWSLSSPTPA LQPSSDLGAD GKDTSCIIEE AVVARGSSAV GEISPTPEEK 480 MEKGNPSAST DCGVPEQVKL KPSAALLNSS LKSTEASGGQ PLGSSLEGST KASGRQPVGS 540 FLDGNTKVSG RQASGQFLEG STKASVWQSG SCLETSTKGS GWGSSVDGST KGSGWGSSVD 600 GSTKGSGRGL SLEVNAKGSG WGSSLEGGTK GSGWGSSLEG GTKGSGWGSS LEGSTQASGW 660 LRSSSSPEGR KTPGRHSSAR ESSKVNFKSG SQNRNSSSGH QTTPTAKSSS EAQRRQGSTN 720 SNSAGWGEAP GSNKSWHPSS GSASRGSQSN QHHDRHCHGN ESRRGSYQGN DSRRGSSNHS 780 RRSSDHRQDH GSGMSSRSSS RGQSQRGICK YYENGHCWKG PSCSFVHR

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence

MKIWLTFESE ENSLLLTEVL STQKKDIIQP TPVINNNKSA WAGSGQDRIN PSMTGNITSP  60
IGYNVVYSSG LPSQSSDHPP LRRESPNFMG EALPSTTCWE PLASSVQIQH QANYASTIPS  120
FAGSYRSTGP HGDGVPREKI GEHNNRQETG GLCSPTPAPK IHNSQSNMKP ESCSRSNLVD  180
GRESNSALGI PSQSRAPACG AQSTSFTCTS SSSKTKEIMN LQKPCPPDAS NASVNQLFEP  240
KIDSVLSPGT QDQYPSPNPK FERKQPVMNK SGSTSVAPED SATKAYDHSS IAFVSETSGP  300
PSSKFVGLQL LKETQTSCVE ERDLKDGGCV TQTAPLKGDA TSAKRDNITV SSVSDAGVCD  360
VLGSLTEPNC GTYNVHAGMP LENVTPASAE EERPQCSSPI ALSPWGEPSY YQGGAVDSAL  420
WGVQDDPSND MWSLSSPTPA LQPSSDLGAD GKDTSCIIEE AVVARGSSAV GEISPTPEEK  480
MEKGNPSAST DCGVPEQVKL KPSAALLNSS LKSTEASGGQ PLGSSLEGST KASGRQPVGS  540
FLDGNTKVSG RQASGQFLEG STKASVWQSG SCLETSTKGS GWGSSVDGST KGSGWGSSVD  600
GSTKGSGRGL SLEVNAKGSG WGSSLEGGTK GSGWGSSLEG GTKGSGWGSS LEGSTQASGW  660
LRSSSSPEGR KTPGRHSSAR ESSKVNFKSG SQNRNSSSGH QTTPTAKSSS EAQRRQGSTN  720
SNSAGWGEAP GSNKSWHPSS GSASRGSQSN QHHDRHCHGN ESRRGSYQGN DSRRGSSNHS  780
RRSSDHRQDH GSGMSSRSSS RGQSQRGICK YYENGHCWKG PSCSFVHR

Link Out ? help Back to Top
Ensembl	TRIDC1AG027190.4