PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1AG005200.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 63aa    MW: 6985.01 Da    PI: 10.7284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1AG005200.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +rien++ rqvtfskR+ g++KKA EL vLCda+vav++fs+tg+ly+yss
  TRIDC1AG005200.3  9 ERIENTTSRQVTFSKRKSGLFKKARELGVLCDAQVAVLLFSNTGRLYDYSS 59
                      69***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    
MVRGKAVIER IENTTSRQVT FSKRKSGLFK KARELGVLCD AQVAVLLFSN TGRLYDYSSS  60
NSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-29MIKC_MADS family protein