PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY92848.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 737aa MW: 81892 Da PI: 6.9532

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY92848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.4e-06	100	124	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C++ a++G C yG++C+F+H+ TEY92848.1 100 ICPTVAKSGnvsSCVYGENCRFSHD 124 6***********************7 PP
2	zf-CCCH	18.8	2.9e-06	140	157	6	23
-SGGGGTS--TTTTT-SS CS zf-CCCH 6 CrffartGtCkyGdrCkF 23 C+f + tG C+yG C+F TEY92848.1 140 CPFLSNTGPCPYGLACRF 157 *****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MEDPSPRDDT SNDVVPTEAP PTLPHCQLTA AELVAKSIAP VKREFLRPPP VRNCDKSADD 60 NSDDKEAPQA AATPPILKDK KSKRQMKRDR RQEQKSVLHI CPTVAKSGNV SSCVYGENCR 120 FSHDLEAFKS QKPADLEGVC PFLSNTGPCP YGLACRFGGT HKADNGEVAT SANVDKKNSE 180 MNVLTKDVQR LLWKNRMKFP KADAALKLLG LQVQGKKAKP SGNDNDDETN GSNVNGNGCC 240 REDSAEVLED IVDKADVTDE VRRSKKTKCS TDEACDALTD GGVIIHEKDV GESCKQSEPE 300 SVVENIVEDN DKCLKLHPRE KKIIDFRDKL YLAPLTTVGN LPFRRVCKGL GVDITCGEMA 360 MCTSLLQGQA SEWALLRRHS SEDFFGVQIC GAFPDTVART VELIDDNCTL DFIDINMGCP 420 IDIVVNKGAG SALLTKPMRM KSVVEASSKA VSTALTLKVR TGYFEGKNRI DSLIADMGNW 480 GTTAVTVHGR TRQQRYYKLA DWEYIYQCAR AAPSNMQVLG NGDVFSYLDW NAHKSDCPEL 540 STCMIARGAL VKPWIFTEIK EQRHWDITSG ERLNILKDYV RFGLEHWGSD SKGTCKWGCK 600 RAKPNTDSIG PVSQTFYHFL NNAKTFQQNL ETLFKNRFEL TSLALEMAGV ETTRHFLLEW 660 LSYTCRYIPV GLLDVIPPKI NWRAPSYFGR DDLETLMGSD SAADWIRLTE MLLGKVPPGF 720 TFAPKHKSNA YDKAENG

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MEDPSPRDDT SNDVVPTEAP PTLPHCQLTA AELVAKSIAP VKREFLRPPP VRNCDKSADD  60
NSDDKEAPQA AATPPILKDK KSKRQMKRDR RQEQKSVLHI CPTVAKSGNV SSCVYGENCR  120
FSHDLEAFKS QKPADLEGVC PFLSNTGPCP YGLACRFGGT HKADNGEVAT SANVDKKNSE  180
MNVLTKDVQR LLWKNRMKFP KADAALKLLG LQVQGKKAKP SGNDNDDETN GSNVNGNGCC  240
REDSAEVLED IVDKADVTDE VRRSKKTKCS TDEACDALTD GGVIIHEKDV GESCKQSEPE  300
SVVENIVEDN DKCLKLHPRE KKIIDFRDKL YLAPLTTVGN LPFRRVCKGL GVDITCGEMA  360
MCTSLLQGQA SEWALLRRHS SEDFFGVQIC GAFPDTVART VELIDDNCTL DFIDINMGCP  420
IDIVVNKGAG SALLTKPMRM KSVVEASSKA VSTALTLKVR TGYFEGKNRI DSLIADMGNW  480
GTTAVTVHGR TRQQRYYKLA DWEYIYQCAR AAPSNMQVLG NGDVFSYLDW NAHKSDCPEL  540
STCMIARGAL VKPWIFTEIK EQRHWDITSG ERLNILKDYV RFGLEHWGSD SKGTCKWGCK  600
RAKPNTDSIG PVSQTFYHFL NNAKTFQQNL ETLFKNRFEL TSLALEMAGV ETTRHFLLEW  660
LSYTCRYIPV GLLDVIPPKI NWRAPSYFGR DDLETLMGSD SAADWIRLTE MLLGKVPPGF  720
TFAPKHKSNA YDKAENG