PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY92603.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 318aa MW: 35681.8 Da PI: 6.5073

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY92603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.1	3.8e-15	243	267	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yG++C+FaHg TEY92603.1 243 KTELCNKWQETGACPYGENCQFAHG 267 9***********************8 PP
2	zf-CCCH	20	1.2e-06	280	305	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ TEY92603.1 280 YKTEVCRMVLAGDVCPYGHRCHFRHS 305 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MQREDVSYDS LLTSSAADKS AAASLLFSFT NPFLPPTSPT YVNSDASFYS SLFQNHSSST 60 TSDTASFDGG DDADRRLQDA SCVVEYQQLY NRYTLCLAQL HDSIEEADAL RRDNESLRLS 120 NADLTHRIAL LFSRDRLLSD FNRLNVASPS AAAPRAAHLS LTQPLAEHNR VERRSIERVT 180 LPKSISVRTS GFLKMTRPGR DTTGEKAVSQ PTPELREQQR VYVGGSTAEN VEELDVYNQG 240 MTKTELCNKW QETGACPYGE NCQFAHGINE LRPVIRHPRY KTEVCRMVLA GDVCPYGHRC 300 HFRHSLTEEE RLMVAPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-66	C3H family protein