PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY88379.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

M-type_MADS

Protein Properties

Length: 414aa MW: 47318.5 Da PI: 4.8093

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY88379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.1	6.3e-20	15	53	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rqvt+ kRr+gilKKA+E+SvLCd+ + +iifs++gk TEY88379.1 15 NSRQVTYGKRRAGILKKAQEISVLCDIPIVLIIFSPSGK 53 579**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIIFSP SGKPSIFCGQ 60 RSNIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQNR 120 VTTLQAQIAE LHERIRWWSN PDTIEDIEHL DQMENSLRES LNRTHITKAK KSDLDCTIQA 180 KSDQTKCTDI IIIQQEKMFK EPLIQFDCTS QVCGDFGRVY EQELPKPQFA NNMQFPLATS 240 SDQDCVNQSW LPGGEGQHMM LSGEPQFLGS RDMECSDYFP NVKEQDLDNS REMKTERRLD 300 LLSIDDYSYS AHMRPPLGDQ YPYNSFGNLS FPDLMEPGKD MNFQLSSLGY QINGNFDLPH 360 SLVPNAGPCA ISMLDDNSYP PVSMSQFCGM QYNELSTSKQ TTCHFLQPPD CSSD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGRVKLKIQR LETLNSRQVT YGKRRAGILK KAQEISVLCD IPIVLIIFSP SGKPSIFCGQ  60
RSNIDEMIAK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQNR  120
VTTLQAQIAE LHERIRWWSN PDTIEDIEHL DQMENSLRES LNRTHITKAK KSDLDCTIQA  180
KSDQTKCTDI IIIQQEKMFK EPLIQFDCTS QVCGDFGRVY EQELPKPQFA NNMQFPLATS  240
SDQDCVNQSW LPGGEGQHMM LSGEPQFLGS RDMECSDYFP NVKEQDLDNS REMKTERRLD  300
LLSIDDYSYS AHMRPPLGDQ YPYNSFGNLS FPDLMEPGKD MNFQLSSLGY QINGNFDLPH  360
SLVPNAGPCA ISMLDDNSYP PVSMSQFCGM QYNELSTSKQ TTCHFLQPPD CSSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-69	M-type_MADS family protein