PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TEY86237.1
Organism
Salvia splendens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
Family C3H
Protein Properties Length: 271aa    MW: 30110.1 Da    PI: 9.2061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TEY86237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-09108128425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 ++C+++ + G C+yGd+CkF H
  TEY86237.1 108 KICNYWVQ-GSCRYGDTCKFLH 128
                 68******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MDVDGGRRIF NRLGPSSSTD HRNNNTRQQK VCFHWAKGNC TRNPCPFLHP TAANGKRGHQ  60
GFGAEDNYRD SGGGFRRTGN YNFNSNSSWG RPQPAIGGRN FVRKVEKKIC NYWVQGSCRY  120
GDTCKFLHQW STDSFTPLTT LEGHKQAVTG ITLPSGSDKL YSGSEDETVR VWDCQSDQLS  180
GVVNLGCSVG CMLSEGPWVF VGLTNLVKFH FVIYLSITFL RVKSLHSILS LEPALPYLHS  240
LRLSSVTAIP YCCASSMSLS LPLRIATFPR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-62C3H family protein