PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY85411.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 510aa MW: 53789.7 Da PI: 7.1251

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY85411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.2e-12	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ TEY85411.1 51 DEPDCIYYLRTGFCGYGNRCRFNHPR 76 6899********************96 PP
2	zf-CCCH	34.8	2.8e-11	118	143	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY85411.1 118 GEKECSYYVKTGQCKFGVTCKFHHPQ 143 6789********************97 PP
3	zf-CCCH	32.9	1.1e-10	288	314	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ r+G Ck+G++Ck++H+p TEY85411.1 288 PGQPECQYYIRNGDCKFGATCKYHHPP 314 5789*********************97 PP
4	zf-CCCH	36.3	9.5e-12	381	404	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY85411.1 381 PLCSHYAQNGVCKFGPSCKFDHPM 404 8*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MERYSGIQAM EAVPADPVAE WAAVGGDTGL EEPMWQLGLG GGPESYPERP DEPDCIYYLR 60 TGFCGYGNRC RFNHPRDRGP AMGALRAGGG EYPERVGQPI CQKIIHLASC FIVFFWQGEK 120 ECSYYVKTGQ CKFGVTCKFH HPQPAGIPMP APPGPGSMTA SAAMPTPAMY PAGPSPSAHQ 180 PSQQYGVIQG NWPVARPAML QGSYVPGSYG HMILPPGVVP IPGWTPYPAP VSPAASLSTQ 240 QTIGAAPIYG ITQLSPSATA YTGSYLSVTS SAGQSSGSQK EQALPERPGQ PECQYYIRNG 300 DCKFGATCKY HHPPEWSASR TSYVLSPMGL PLRPVSIHLS LEVCCVMLQQ RLLLLINQNL 360 HMDAPISAQP LAPILTLEGA PLCSHYAQNG VCKFGPSCKF DHPMRSLSYS PSASSLTDMP 420 VAPYPVGSTT ATLAPSSSSS DLRPELLSGF SKNLPSSQIS SMSSSSASVG SIFSNTGAFP 480 QSYVQQSGQG SVSSGGGSSA SHGGETHASS

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MERYSGIQAM EAVPADPVAE WAAVGGDTGL EEPMWQLGLG GGPESYPERP DEPDCIYYLR  60
TGFCGYGNRC RFNHPRDRGP AMGALRAGGG EYPERVGQPI CQKIIHLASC FIVFFWQGEK  120
ECSYYVKTGQ CKFGVTCKFH HPQPAGIPMP APPGPGSMTA SAAMPTPAMY PAGPSPSAHQ  180
PSQQYGVIQG NWPVARPAML QGSYVPGSYG HMILPPGVVP IPGWTPYPAP VSPAASLSTQ  240
QTIGAAPIYG ITQLSPSATA YTGSYLSVTS SAGQSSGSQK EQALPERPGQ PECQYYIRNG  300
DCKFGATCKY HHPPEWSASR TSYVLSPMGL PLRPVSIHLS LEVCCVMLQQ RLLLLINQNL  360
HMDAPISAQP LAPILTLEGA PLCSHYAQNG VCKFGPSCKF DHPMRSLSYS PSASSLTDMP  420
VAPYPVGSTT ATLAPSSSSS DLRPELLSGF SKNLPSSQIS SMSSSSASVG SIFSNTGAFP  480
QSYVQQSGQG SVSSGGGSSA SHGGETHASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-102	C3H family protein