PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY82130.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 729aa MW: 78744.4 Da PI: 6.5028

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY82130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TEY82130.1 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MCSGLEKSNS NSCTTQGPAV NQSNMKDLNN LSVETEGSLS SLLEFAANND IESFKRLIEV 60 DLFVVDKAGL WYVRKKGSKQ ISQEERTPLM VAATYGSVDV LKLLVALPEV DLNKSCGGNK 120 WTALHCAAFG GSVHAVDVVK LLLSAGADPN IEDTCALRPV DVIVVPPKLP GAKAALEDLF 180 TNNISDGSVG ECNLPVTISG SNASSPVLSS SPESRSMCSL SDSVSSPTAP KFGDPAANSV 240 SDKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CARQVCFFAH 360 NQEELRPLYV STGSGVPSPR SVASASSFMD MAAALSLLPG SPTSQSVMSP AFNQSMPPTA 420 NGMSHSSSGA WTQQNVPTLN LPGSNLQSSR LRSSLSARDI PPEDLNMLQD YDSQQLILND 480 MACFSQQGNS ARLGSGRSRT MLTPSNLEEL FSAEIASSPR LSDQAAGFGV FSPSHKPAAL 540 NHFQPQQNIL SPINTNVFSP RNVEHPLLQA SFGVSSPRMS PRSLEPVSPM NARLSAFAQR 600 ERQQQQMRSL SSRELGSNRA PVVGSPTSAW AKWGQANGKV DWSVGADHEG GLKRSSSFDC 660 RADGEEPDLS WVQSLVKESP PEMMDKAAAP SSGAAPSGEC LKPNPQTDSV DHTVLGAWLD 720 QMRLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MCSGLEKSNS NSCTTQGPAV NQSNMKDLNN LSVETEGSLS SLLEFAANND IESFKRLIEV  60
DLFVVDKAGL WYVRKKGSKQ ISQEERTPLM VAATYGSVDV LKLLVALPEV DLNKSCGGNK  120
WTALHCAAFG GSVHAVDVVK LLLSAGADPN IEDTCALRPV DVIVVPPKLP GAKAALEDLF  180
TNNISDGSVG ECNLPVTISG SNASSPVLSS SPESRSMCSL SDSVSSPTAP KFGDPAANSV  240
SDKKQYPVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CARQVCFFAH  360
NQEELRPLYV STGSGVPSPR SVASASSFMD MAAALSLLPG SPTSQSVMSP AFNQSMPPTA  420
NGMSHSSSGA WTQQNVPTLN LPGSNLQSSR LRSSLSARDI PPEDLNMLQD YDSQQLILND  480
MACFSQQGNS ARLGSGRSRT MLTPSNLEEL FSAEIASSPR LSDQAAGFGV FSPSHKPAAL  540
NHFQPQQNIL SPINTNVFSP RNVEHPLLQA SFGVSSPRMS PRSLEPVSPM NARLSAFAQR  600
ERQQQQMRSL SSRELGSNRA PVVGSPTSAW AKWGQANGKV DWSVGADHEG GLKRSSSFDC  660
RADGEEPDLS WVQSLVKESP PEMMDKAAAP SSGAAPSGEC LKPNPQTDSV DHTVLGAWLD  720
QMRLDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein