PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY82033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27500.1 Da PI: 9.4881 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.2 | 2.1e-23 | 27 | 73 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ +k+y + TEY82033.1 27 MENHSNLQVTFSKRRAGLFKKASELCTLCGAEAAIVVFSPANKVYCF 73 69******************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MNSSSSSKQS APARKSKGRQ KVKMVKMENH SNLQVTFSKR RAGLFKKASE LCTLCGAEAA 60 IVVFSPANKV YCFGHPSVED VVDRLSAPPP PPPTHLLMEA HRNSNIRDLN IDLTRLETML 120 RSERARAGEI DRLREAGRHQ GWLPASLDGF DHAQLGALKE RVAGFKKELD DKVQKEMVRV 180 SETSQRLHCH SGDPSWTLSL GFDHLLPYST MSNEGYYHGW SGGGGHVFNG STDGASSSTL 240 PNHMFFPTI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-42 | M-type_MADS family protein |