PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY80725.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 859aa MW: 96138.4 Da PI: 7.3554

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY80725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.5e-07	234	255	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr+f + G C+ Gd+C+F+H TEY80725.1 234 VPCRNFVK-GSCRWGDNCRFSHH 255 79****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MGERRKRKSL WSEEAETKPF TGNHSGIVDW INGSYPRERE NAYQEKEIGG ENSYYQDMSP 60 KFKYNHLLED DQSHSRRYQG RGRSRSRSRS RSKGRCRSRS LSRGIERERT RGESRSDSDA 120 QGWTRSRSPL RDYKHQASGW SDGRSLPEMS NEADFAPGRG RRDDFSKYFL PKNTNHRDGA 180 LGGRDTSESR RSRADHGNDS KLSYSRGARI ELRSDASDPY HGENEQFLNN SRNVPCRNFV 240 KGSCRWGDNC RFSHHIASDE TCVEGTKRSS SDKDPEHQPY RNRNPLCKYF AAGKCDRDNC 300 KFFHEDPNFN RLVGRLGKVN NDHNSRDGSS RDNDSISRDN DLSSRDKVNK RDGLRWESCN 360 EAAGISNDMN PSGGDSSTVI VTESTVDNSN AGQNNTMSHS LGNEKVNWGL PQHTTNLVPV 420 HHAGNGSYGG DAGTTESAIE ENMMAEQDVL VFHGSLLQNP DGNTNKLQVD QRFPLNAWQQ 480 NVSLVSHIQH QNHGVVENNV VSSFRSDVIN EVKDSRNATV AAFISAENLH QNGKSVLLGS 540 SSITTEAGSK DMPALNGAEI HHVANLNLSQ IQKLQNAIQM AGISETNTML SFPKSVISEQ 600 SAQYTNTLPS TTLQQVPPVP NQRFENQHST KIPIEEVSNS IEMVPSTANA SGHVPLDCAY 660 MQLNRVTVSH DPISSAENGR NSNEHEEGTK MPPTDNTEID NSERSQEQQE MAHKNAECDE 720 VKGGMGEQSK GVQVSKHSET LEDHGKADES IGNKDDKGTR LFKNSLIEFV KDKLKPKWKE 780 GRMSRDVHKT IVKKVVDKIT SSIQTDHVPK TQEKIEQYLS FSEPKITKLV QVNCVIQSVL 840 FKPTSLSKDF LDILRSGCT

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MGERRKRKSL WSEEAETKPF TGNHSGIVDW INGSYPRERE NAYQEKEIGG ENSYYQDMSP  60
KFKYNHLLED DQSHSRRYQG RGRSRSRSRS RSKGRCRSRS LSRGIERERT RGESRSDSDA  120
QGWTRSRSPL RDYKHQASGW SDGRSLPEMS NEADFAPGRG RRDDFSKYFL PKNTNHRDGA  180
LGGRDTSESR RSRADHGNDS KLSYSRGARI ELRSDASDPY HGENEQFLNN SRNVPCRNFV  240
KGSCRWGDNC RFSHHIASDE TCVEGTKRSS SDKDPEHQPY RNRNPLCKYF AAGKCDRDNC  300
KFFHEDPNFN RLVGRLGKVN NDHNSRDGSS RDNDSISRDN DLSSRDKVNK RDGLRWESCN  360
EAAGISNDMN PSGGDSSTVI VTESTVDNSN AGQNNTMSHS LGNEKVNWGL PQHTTNLVPV  420
HHAGNGSYGG DAGTTESAIE ENMMAEQDVL VFHGSLLQNP DGNTNKLQVD QRFPLNAWQQ  480
NVSLVSHIQH QNHGVVENNV VSSFRSDVIN EVKDSRNATV AAFISAENLH QNGKSVLLGS  540
SSITTEAGSK DMPALNGAEI HHVANLNLSQ IQKLQNAIQM AGISETNTML SFPKSVISEQ  600
SAQYTNTLPS TTLQQVPPVP NQRFENQHST KIPIEEVSNS IEMVPSTANA SGHVPLDCAY  660
MQLNRVTVSH DPISSAENGR NSNEHEEGTK MPPTDNTEID NSERSQEQQE MAHKNAECDE  720
VKGGMGEQSK GVQVSKHSET LEDHGKADES IGNKDDKGTR LFKNSLIEFV KDKLKPKWKE  780
GRMSRDVHKT IVKKVVDKIT SSIQTDHVPK TQEKIEQYLS FSEPKITKLV QVNCVIQSVL  840
FKPTSLSKDF LDILRSGCT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RGRSRSRSR
2	81	91	RGRSRSRSRSR
3	81	93	RGRSRSRSRSRSK
4	83	91	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein