PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY72801.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 353aa MW: 38429.2 Da PI: 6.8336

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY72801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.3e-09	99	123	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ TEY72801.1 99 YKTKLCCKFRA-GTCPYITNCNFAHS 123 9********.***********8 PP
2	zf-CCCH	17.4	8e-06	170	195	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ TEY72801.1 170 YKGRHCKKFYTEEGCPYGENCTFLHD 195 78888********************7 PP
3	zf-CCCH	42.3	1.3e-13	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg TEY72801.1 242 WKTRICNKWELTGYCPFGSKCHFAHG 267 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDYRRENRLS SGDVVHVLSR SSQNPVNETW ESALVDQAVW ATEDDYGMWN GEASFDTNSN 60 SSYDGARAGS EPPNKRSRGS NSGDGAASNR SKAIGKMFYK TKLCCKFRAG TCPYITNCNF 120 AHSVEELRKP PDNWQEIVAA HEEERASSAE PREEFQIPIV GVSDETQRSY KGRHCKKFYT 180 EEGCPYGENC TFLHDEQSKA RESVAISLGP GSGTGTGTGN SNGGGSGYGG GASGPTLKPS 240 NWKTRICNKW ELTGYCPFGS KCHFAHGAAE LHNFGGGATD SDAKDPSTPD AKQLVRTSVD 300 AVIAGLPHTE GYHMGIPPQR LSNAIQRTGQ RPNQKWKGPD KISKIYGDWI DDL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDYRRENRLS SGDVVHVLSR SSQNPVNETW ESALVDQAVW ATEDDYGMWN GEASFDTNSN  60
SSYDGARAGS EPPNKRSRGS NSGDGAASNR SKAIGKMFYK TKLCCKFRAG TCPYITNCNF  120
AHSVEELRKP PDNWQEIVAA HEEERASSAE PREEFQIPIV GVSDETQRSY KGRHCKKFYT  180
EEGCPYGENC TFLHDEQSKA RESVAISLGP GSGTGTGTGN SNGGGSGYGG GASGPTLKPS  240
NWKTRICNKW ELTGYCPFGS KCHFAHGAAE LHNFGGGATD SDAKDPSTPD AKQLVRTSVD  300
AVIAGLPHTE GYHMGIPPQR LSNAIQRTGQ RPNQKWKGPD KISKIYGDWI DDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-115	C3H family protein