PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY70789.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 410aa MW: 44667.8 Da PI: 7.9742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY70789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	7.2e-12	46	71	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG+ C+F+H+ TEY70789.1 46 PGEPDCIYYLRTGSCGYGSDCRFNHP 71 5789*********************8 PP
2	zf-CCCH	29.7	1.1e-09	85	104	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+++H++ TEY70789.1 85 HYLKTGTCKYGSTCRYHHPK 104 8*****************96 PP
3	zf-CCCH	34.6	3.3e-11	124	147	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++rtG CkyG CkF+H++ TEY70789.1 124 KPCPFYMRTGLCKYGYACKFHHPQ 147 69********************97 PP
4	zf-CCCH	36.4	8.6e-12	248	273	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f++ G CkyG+ Ck++H++ TEY70789.1 248 DQPECRYFMEHGNCKYGSECKYHHPR 273 689*********************96 PP
5	zf-CCCH	34.1	4.6e-11	295	319	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ +G CkyG++C+F H++ TEY70789.1 295 QPVCSYYSMYGLCKYGPTCRFDHPM 319 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MPGNRKFSRN GSTSDRVEEA MRRLKVEESG ENGGAGDELG SYPDRPGEPD CIYYLRTGSC 60 GYGSDCRFNH PSSAGQFSVH ALNEHYLKTG TCKYGSTCRY HHPKDRQADF VLNMLGLPMR 120 QDAKPCPFYM RTGLCKYGYA CKFHHPQPTL AAANVLPVAG PVYGSGGSTG VSSLGASSES 180 VSAASLSKAT YFASSLQVPH SYMPLFIPQS QGWNTYMGNA SQLSVTSVLT GPVPSGHLSV 240 SFLPERPDQP ECRYFMEHGN CKYGSECKYH HPREKLTQLV STSLGPLGLP LRAGQPVCSY 300 YSMYGLCKYG PTCRFDHPMD GHNYAYSLSV PPPAFAYLSP TPYQSTSLPV ADISPTKSSR 360 LSDWIKKEAT ANNKHHQNSN TKSPGESLDQ SDSLPHSSKA SSEVHHGESD

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MPGNRKFSRN GSTSDRVEEA MRRLKVEESG ENGGAGDELG SYPDRPGEPD CIYYLRTGSC  60
GYGSDCRFNH PSSAGQFSVH ALNEHYLKTG TCKYGSTCRY HHPKDRQADF VLNMLGLPMR  120
QDAKPCPFYM RTGLCKYGYA CKFHHPQPTL AAANVLPVAG PVYGSGGSTG VSSLGASSES  180
VSAASLSKAT YFASSLQVPH SYMPLFIPQS QGWNTYMGNA SQLSVTSVLT GPVPSGHLSV  240
SFLPERPDQP ECRYFMEHGN CKYGSECKYH HPREKLTQLV STSLGPLGLP LRAGQPVCSY  300
YSMYGLCKYG PTCRFDHPMD GHNYAYSLSV PPPAFAYLSP TPYQSTSLPV ADISPTKSSR  360
LSDWIKKEAT ANNKHHQNSN TKSPGESLDQ SDSLPHSSKA SSEVHHGESD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	4e-85	C3H family protein