PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY59138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 231aa MW: 25096.9 Da PI: 4.6755 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.9 | 4.6e-17 | 17 | 61 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ienk v+fskRr g+ KKA+ELS+LC+++v iifs++g + TEY59138.1 17 IENKDDLLVSFSKRRVGMYKKASELSTLCGVDVGAIIFSPSGIPH 61 999999**********************************99655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MSEKKTRGRQ KIPIRLIENK DDLLVSFSKR RVGMYKKASE LSTLCGVDVG AIIFSPSGIP 60 HSFFTPDFDS VVHGRRDGNG PLTRIHEINN RLDGVVEQLE REERREKHLG GGEMGWWESP 120 LESLDAEQVK EQIEWFRTFR EQIKGRVEEL KNGGASSAAA GDGGGGVLGG ESFFAAPVSD 180 DAYGFAPAFD GGRYGSLDLF GGGMENEYFP GPSDLCGDGC GYLNGEAGPS E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-23 | M-type_MADS family protein |