PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY54450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 27732.6 Da PI: 8.9183 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.8e-09 | 69 | 94 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ + Ck+Gd+C+FaHg+ TEY54450.1 69 KTKICNKYKTAEGCKFGDKCNFAHGE 94 89**********************96 PP | |||||||
2 | zf-CCCH | 31.5 | 3e-10 | 233 | 258 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ TEY54450.1 233 FKTKLCENFGK-GSCTFGDRCHFAHGE 258 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence |
MSCNRNGLLI KCVAGCPFGE NCHFLHHVPG GYNAVAQMMN LAPAPTPRPV GGPPLPAHQN 60 GYGSPAAVKT KICNKYKTAE GCKFGDKCNF AHGEWELGKP IVPSHSHDNP HLAAGPMPGR 120 FSARPELHAP GPTANFGLTA TTKISVDASL AGAVIGKGGV NSKQICRQTG TKLSIRDHEA 180 NPNLKNIELE GTFEQIQQAS VMVRELILSI GSGGAGELGR GAVAASTGRG GNFKTKLCEN 240 FGKGSCTFGD RCHFAHGEAE LRKTG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-59 | C3H family protein |