PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY51476.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 554aa MW: 60345 Da PI: 8.4547

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY51476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.2e-08	31	55	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C ++ rtG C y ++C+++H+p TEY51476.1 31 LPDCAYYVRTGSCGYAAKCRYNHPP 55 589********************96 PP
2	zf-CCCH	42.2	1.3e-13	66	91	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtGtCk+G++CkF+H++ TEY51476.1 66 GEPPCQYYLRTGTCKFGSSCKFNHPK 91 579*********************96 PP
3	zf-CCCH	22.2	2.4e-07	112	137	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+ +CkF H++ TEY51476.1 112 GEKECSYYLKTGQCKFHMTCKFDHPQ 137 7899********************97 PP
4	zf-CCCH	38	2.8e-12	267	291	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++ C++++rtG CkyG++C+++H TEY51476.1 267 PGQPDCKYYMRTGDCKYGPSCRYNH 291 5789********************* PP
5	zf-CCCH	29.7	1.1e-09	309	332	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 C+f++++G+Ck+G +Ck+ H+ TEY51476.1 309 VQACSFYMQNGQCKFGRTCKYDHP 332 668********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MALYGDRQEE EWTHDSGLAD SMQVYPERPG LPDCAYYVRT GSCGYAAKCR YNHPPLGVGE 60 CPKRLGEPPC QYYLRTGTCK FGSSCKFNHP KNDGASFTSA PLNTYGYPLR PGEKECSYYL 120 KTGQCKFHMT CKFDHPQSDG TSVSASARPF YPTPQSLSSP SPELYDSTTS SYRVGRPSLF 180 PGSFVAGAYG PMLLPGVVPI PNWSPHSGPV SPAPSPGAQA SVGASSVYGL SQLGSSSPAF 240 RGAYSHLPLS AGSSGSIVQE QKFPQRPGQP DCKYYMRTGD CKYGPSCRYN HTEFNCALSP 300 LGLPLRPRVQ ACSFYMQNGQ CKFGRTCKYD HPIATLKYSP ASSYTEIPGS NVDPGRNGSR 360 SSPSDLHDLQ TKRTIGGGHE RGGLYYLDNV SHVSPSALSA AVSPYQWHCR LGHPSSASLR 420 SLVPVASVYT RRRRPATAPE APETVPTVSC PLQQSSSPPA SENPPPSDEL PIAIRKVIPT 480 SYQEALKHPL WRAAMDEEMR ALLSRGTWVL VHAPDSVDIV SCRWIADIFT KPLPVKRFSE 540 LCTKLDLINI YDPA

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MALYGDRQEE EWTHDSGLAD SMQVYPERPG LPDCAYYVRT GSCGYAAKCR YNHPPLGVGE  60
CPKRLGEPPC QYYLRTGTCK FGSSCKFNHP KNDGASFTSA PLNTYGYPLR PGEKECSYYL  120
KTGQCKFHMT CKFDHPQSDG TSVSASARPF YPTPQSLSSP SPELYDSTTS SYRVGRPSLF  180
PGSFVAGAYG PMLLPGVVPI PNWSPHSGPV SPAPSPGAQA SVGASSVYGL SQLGSSSPAF  240
RGAYSHLPLS AGSSGSIVQE QKFPQRPGQP DCKYYMRTGD CKYGPSCRYN HTEFNCALSP  300
LGLPLRPRVQ ACSFYMQNGQ CKFGRTCKYD HPIATLKYSP ASSYTEIPGS NVDPGRNGSR  360
SSPSDLHDLQ TKRTIGGGHE RGGLYYLDNV SHVSPSALSA AVSPYQWHCR LGHPSSASLR  420
SLVPVASVYT RRRRPATAPE APETVPTVSC PLQQSSSPPA SENPPPSDEL PIAIRKVIPT  480
SYQEALKHPL WRAAMDEEMR ALLSRGTWVL VHAPDSVDIV SCRWIADIFT KPLPVKRFSE  540
LCTKLDLINI YDPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-123	C3H family protein