PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY49196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | C3H | ||||||||
Protein Properties | Length: 512aa MW: 54542.2 Da PI: 7.6319 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.2e-12 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ TEY49196.1 32 DEPDCIYYLRTGFCGYGNRCRFNHPR 57 6899********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.2e-12 | 118 | 142 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtG Ck+G++Ck++H++ TEY49196.1 118 EPVCQYFMRTGMCKFGASCKYNHPK 142 789********************96 PP | |||||||
3 | zf-CCCH | 34.6 | 3.2e-11 | 163 | 188 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ TEY49196.1 163 GEKECSYYIKTGQCKFGVTCKFHHPQ 188 6789********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.3e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G++Ck++H+p TEY49196.1 333 PGQPDCQYYLRTGDCKFGATCKYHHPP 359 5789*********************97 PP | |||||||
5 | zf-CCCH | 36.6 | 7.5e-12 | 381 | 405 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ TEY49196.1 381 APLCSHYAQNGVCKFGPSCKFDHPM 405 68*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence |
MPIDSRFDFV IAEPMWGLGL GEGPESYPER PDEPDCIYYL RTGFCGYGNR CRFNHPRDRS 60 AQIGACALNG IKGFYVILIA TRAEWNLPVL REYAEEIVYD AMGALRATGG EYPERHGEPV 120 CQYFMRTGMC KFGASCKYNH PKHGAGSSPP TTLNFYGYPL RQGEKECSYY IKTGQCKFGV 180 TCKFHHPQPA GIQMPAPGAG PGPLAGPAAM PTPTLYPTVQ SPSVQSSQQY GVLHGNWPVS 240 RPTMLPGSYV PGSYGHMLLA PGVVPVPGWN PYSAQVSPGA LQSSQPTVGA GPVYGITQLP 300 PSSTTYTGAH LSGTSLSGPS SSSQKEHAFP DRPGQPDCQY YLRTGDCKFG ATCKYHHPPE 360 WSSQQSVVVL SPMGLPMRPG APLCSHYAQN GVCKFGPSCK FDHPMRALSY STSASSLTDM 420 PVAPYPVGST NATLAPSSSS SLDLRPELLS GFSKDAFPAN LSSTNSSSAS IGSTFSRSGL 480 IPEFGIQHSG QSTASSTGGS SSHQEGEVNI SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-123 | C3H family protein |