PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY48610.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C2H2

Protein Properties

Length: 1250aa MW: 137024 Da PI: 4.886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY48610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	410	431	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++C+ +F++k+++ +H+++ H TEY48610.1 410 CHKCNITFKDKDEFLNHQSSlH 431 ******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1250 aa Download sequence
MASATVDSGA AASTTDGGLL RLDSIPIVDL RLLSQSELYS LSRCSSSAAD PNRRDDVVIP 60 IIDRSVFNES AGSRKQTYSR LRLAPTDSPS AATPRSRTPH LRSPAAAYGS INTKTDPENV 120 ENHQIINLLK QFFVADMDPA DLFPVKIEYL NSLPPQQFSS PPSPPPVNFP SIGVKRKRGR 180 PRKAVEVSVI DGSYADTLQL PMPSLSEFIP RDNADEKDRE VLNSDGVAVD LAALGASEHP 240 YREEIRRRTD GMRTEEELLG FLTGLYGRWG SRRKKKRIVD ANEFGSKLPV GWKLSLSVKK 300 KNGNVWLYCR RYISPSGLHF VTCKGVSSYL LSLHGMQDTN PCTFVQYNDI VNDADKLTTV 360 PLVVEDDYEI ETFSHAPSPP LDLVTANPEI LVTVNVGNAS EDRIGESLCC HKCNITFKDK 420 DEFLNHQSSL HRKNKNIVRI TDGVIIKDGK YECQFCHKTF SERHRYNGHV GTHVRFQPKL 480 VGEFSQSVYP TSVNVYPTQD NAVEGSSKSH NAMDVCNTIT NNGPTICSNH DKIHGHFGEL 540 EDGSRNIRGM DKATDTVTET NHSSVPEVLF TSNENKSSHN DACLNDSAAE ISKDGSMMQG 600 VMMMESTLSQ NGAADKDMTV SVIENSVSTD NPMQSMASKC LLDSNDHMEE CPVVNDNQHR 660 RNDSNQKTME LNFDPQSLGL NESVLSLFGT QGQGLQDKNL AVSKTDLEIL PCKDIATTES 720 ITSGPEASKL EKGPNISMPI ADNGKASKED NIPCSAVTCK VGDTLSFSKY ENDSSKANNE 780 GVNMHEELQY GMDSNIQTWN RQEDATNKDF SEVFTHLLDV PGVHGMSKSH LAANDKNTYH 840 YENNDGGVCG RETKMPEFDC LQNFGSGQSS DLFSSSSAIV SSNSITGANQ DTRLGVCSPF 900 ISTTDKQLSA EDNMITMFND TMKEHRQDPS EGILLNQSGI SEVSNGAFTS DKVYSTANPS 960 ELNGIEIAGK HELSLSFGSL QTDMCAESNR VEQESYRGNS FNIEAAGPKT YGNPTHSSIL 1020 SSNIAADMEQ ARPFGYSNIS FNDTTNEPGN SFNVVQGGRD WDGTRGNEVR TSSQNFMVGF 1080 GNGSLQTSEC AAADGSWRNG PDNVFGGCYD ANSTPHIQSS SFFPTFGLAP TTGQESSFGV 1140 DHNYGIQSDM MRPVRAQPVE YSFMSEQRVN SLPGEAKNFP YGTNMEQEMD PSFWLGKDAL 1200 MPNASHISQA TSICFENPGT FQCALVHPDL PSSTAFLCEF FCNSKYNDNR

Sequence ? help Back to Top

Protein Sequence Length: 1250 aa Download sequence

MASATVDSGA AASTTDGGLL RLDSIPIVDL RLLSQSELYS LSRCSSSAAD PNRRDDVVIP  60
IIDRSVFNES AGSRKQTYSR LRLAPTDSPS AATPRSRTPH LRSPAAAYGS INTKTDPENV  120
ENHQIINLLK QFFVADMDPA DLFPVKIEYL NSLPPQQFSS PPSPPPVNFP SIGVKRKRGR  180
PRKAVEVSVI DGSYADTLQL PMPSLSEFIP RDNADEKDRE VLNSDGVAVD LAALGASEHP  240
YREEIRRRTD GMRTEEELLG FLTGLYGRWG SRRKKKRIVD ANEFGSKLPV GWKLSLSVKK  300
KNGNVWLYCR RYISPSGLHF VTCKGVSSYL LSLHGMQDTN PCTFVQYNDI VNDADKLTTV  360
PLVVEDDYEI ETFSHAPSPP LDLVTANPEI LVTVNVGNAS EDRIGESLCC HKCNITFKDK  420
DEFLNHQSSL HRKNKNIVRI TDGVIIKDGK YECQFCHKTF SERHRYNGHV GTHVRFQPKL  480
VGEFSQSVYP TSVNVYPTQD NAVEGSSKSH NAMDVCNTIT NNGPTICSNH DKIHGHFGEL  540
EDGSRNIRGM DKATDTVTET NHSSVPEVLF TSNENKSSHN DACLNDSAAE ISKDGSMMQG  600
VMMMESTLSQ NGAADKDMTV SVIENSVSTD NPMQSMASKC LLDSNDHMEE CPVVNDNQHR  660
RNDSNQKTME LNFDPQSLGL NESVLSLFGT QGQGLQDKNL AVSKTDLEIL PCKDIATTES  720
ITSGPEASKL EKGPNISMPI ADNGKASKED NIPCSAVTCK VGDTLSFSKY ENDSSKANNE  780
GVNMHEELQY GMDSNIQTWN RQEDATNKDF SEVFTHLLDV PGVHGMSKSH LAANDKNTYH  840
YENNDGGVCG RETKMPEFDC LQNFGSGQSS DLFSSSSAIV SSNSITGANQ DTRLGVCSPF  900
ISTTDKQLSA EDNMITMFND TMKEHRQDPS EGILLNQSGI SEVSNGAFTS DKVYSTANPS  960
ELNGIEIAGK HELSLSFGSL QTDMCAESNR VEQESYRGNS FNIEAAGPKT YGNPTHSSIL  1020
SSNIAADMEQ ARPFGYSNIS FNDTTNEPGN SFNVVQGGRD WDGTRGNEVR TSSQNFMVGF  1080
GNGSLQTSEC AAADGSWRNG PDNVFGGCYD ANSTPHIQSS SFFPTFGLAP TTGQESSFGV  1140
DHNYGIQSDM MRPVRAQPVE YSFMSEQRVN SLPGEAKNFP YGTNMEQEMD PSFWLGKDAL  1200
MPNASHISQA TSICFENPGT FQCALVHPDL PSSTAFLCEF FCNSKYNDNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	RRKKKR
2	272	301	RRKKKRIVDANEFGSKLPVGWKLSLSVKKK
3	273	302	RRKKKRIVDANEFGSKLPVGWKLSLSVKKK
4	274	303	RRKKKRIVDANEFGSKLPVGWKLSLSVKKK