PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY42947.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 519aa MW: 56062 Da PI: 6.505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY42947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.5e-07	242	262	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C Gd C +aHg TEY42947.1 242 PCPDFKK-GACGKGDACEYAHG 262 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MATNSGFGSG IQQKSCSKLL ELAAMDDLAG LIHEIEDKSV DVNESRFWYG RSFGSKKMGF 60 EERTPIMIAS LYGSTEILSY LIENCKVDVN KACGSDGATA LHCAAAGGAW SSVEVVELLI 120 AASADINAVD AKGRRAGELI APCVKSSIGS RRRRLETLLN GSAAEEERIC VEAPEKKEYP 180 IDVPLPDINN GVYGSDEFRM YSFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKHAYTC 240 VPCPDFKKGA CGKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCARKVCF FAHRPDELRP 300 LYASTGHALA EVLLRGVVGC GGDQPALARV SGVDAAIVPD VAETSSAAGD LNPTNLDDLF 360 QIHLQGMSPS LSSSPKINSF GHLRASYPSN NAGAATYGFE SAAAAVMNSR SSAFSKRSQS 420 FGFRNSNSSG LARAPPPSKL SNWGLGDGNV DWGFNGEDAS KLRKSASFGI RSAGAANPSL 480 EEPEWVNALV RDVPQRRGGL EPMPHWIDQM YVEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MATNSGFGSG IQQKSCSKLL ELAAMDDLAG LIHEIEDKSV DVNESRFWYG RSFGSKKMGF  60
EERTPIMIAS LYGSTEILSY LIENCKVDVN KACGSDGATA LHCAAAGGAW SSVEVVELLI  120
AASADINAVD AKGRRAGELI APCVKSSIGS RRRRLETLLN GSAAEEERIC VEAPEKKEYP  180
IDVPLPDINN GVYGSDEFRM YSFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKHAYTC  240
VPCPDFKKGA CGKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCARKVCF FAHRPDELRP  300
LYASTGHALA EVLLRGVVGC GGDQPALARV SGVDAAIVPD VAETSSAAGD LNPTNLDDLF  360
QIHLQGMSPS LSSSPKINSF GHLRASYPSN NAGAATYGFE SAAAAVMNSR SSAFSKRSQS  420
FGFRNSNSSG LARAPPPSKL SNWGLGDGNV DWGFNGEDAS KLRKSASFGI RSAGAANPSL  480
EEPEWVNALV RDVPQRRGGL EPMPHWIDQM YVEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-135	C3H family protein