PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY41140.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 431aa MW: 46764.4 Da PI: 8.0753

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY41140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.1e-08	37	63	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C y ++C+++H++ TEY41140.1 37 PGQPDCAYYVRTGSCGYAAKCRYNHPR 63 5789*********************96 PP
2	zf-CCCH	37.6	3.6e-12	113	138	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtGtCk+G +CkF+H++ TEY41140.1 113 GEPPCQYYLRTGTCKFGMSCKFNHPK 138 579*********************96 PP
3	zf-CCCH	36.6	7.5e-12	159	184	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF H++ TEY41140.1 159 GEQECSYYLKTGQCKFGITCKFDHPQ 184 6789********************97 PP
4	zf-CCCH	29.8	1e-09	314	335	1	22
--S---SGGGGTS--TTTTT-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCk 22 ++++ C++++rtG CkyG++C+ TEY41140.1 314 PGQPDCKYYMRTGDCKYGPSCR 335 5789*****************8 PP
5	zf-CCCH	21.1	5.5e-07	342	360	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+++ G+Ck+G +Ck+ H+ TEY41140.1 342 FYMQKGQCKFGRTCKYDHP 360 8*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MELYGDQQQV QWAQDSGLED SMRGLNLWER PLYPERPGQP DCAYYVRTGS CGYAAKCRYN 60 HPRDRSCSVS FDMYGNGFTS ETLSSRFVTV SVFIALPLAC IELGVGEYPE RLGEPPCQYY 120 LRTGTCKFGM SCKFNHPKNA GGSLTSAPLN SYGYPLRPGE QECSYYLKTG QCKFGITCKF 180 DHPQSDGTSV SAAARPFYPT VQSLSSPTPE QYDSTTSSYR VARPSLLPGS YVSGAYGPML 240 LPGVVPIPNW NPHSGSVSPA PSPGAQASAG ATSMYGLSQL GSSTPAFVGA YSHLPSSAGP 300 SGSIVQEQKF PQRPGQPDCK YYMRTGDCKY GPSCRECRPA LFYMQKGQCK FGRTCKYDHP 360 IATLKYSPAS SYTEMPGTRY GPGLSAATTL LPSYSFQEMQ GERIAGSSVD PGINRVWHSG 420 NSSSDSANLM L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MELYGDQQQV QWAQDSGLED SMRGLNLWER PLYPERPGQP DCAYYVRTGS CGYAAKCRYN  60
HPRDRSCSVS FDMYGNGFTS ETLSSRFVTV SVFIALPLAC IELGVGEYPE RLGEPPCQYY  120
LRTGTCKFGM SCKFNHPKNA GGSLTSAPLN SYGYPLRPGE QECSYYLKTG QCKFGITCKF  180
DHPQSDGTSV SAAARPFYPT VQSLSSPTPE QYDSTTSSYR VARPSLLPGS YVSGAYGPML  240
LPGVVPIPNW NPHSGSVSPA PSPGAQASAG ATSMYGLSQL GSSTPAFVGA YSHLPSSAGP  300
SGSIVQEQKF PQRPGQPDCK YYMRTGDCKY GPSCRECRPA LFYMQKGQCK FGRTCKYDHP  360
IATLKYSPAS SYTEMPGTRY GPGLSAATTL LPSYSFQEMQ GERIAGSSVD PGINRVWHSG  420
NSSSDSANLM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-125	C3H family protein