PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY41068.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 778aa MW: 85378.8 Da PI: 5.4053

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY41068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4e-11	62	89	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r+G C++Gd+C++aHg+ TEY41068.1 62 WKTSLCSYFRRSGeLCSHGDTCRYAHGE 89 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MAEIPPTETL TSVEHQDSTD QPNPSVSPPP PSAEGINLPE KRKREGEPEP EPSADKAKHP 60 LWKTSLCSYF RRSGELCSHG DTCRYAHGED ELRPRPNNTW DPTSERAKKM AKTNDQDKAV 120 EEGGIMMTEA LEEDGEESSS GLSKCIVNLP MKWSSDNFRF FLNEQKLDGK TVGNNRTLKV 180 SDVIQRPFEK NNKAALPEKP SPDNDDENDS VLPSDSASKA RSARDAVTPL AHMSYSDQLE 240 HKKNSLAQIL KRLTRNARKA CPNGISLPEW ILNAREIGGL PCKLEGIIES PLVNGYRNKC 300 EFSVGNSLQG KHTVGFLLGN FREGVTAVEE PVDCPNVSRI ACKYAAIFQE FLQQSCLPIW 360 NRLNNSGFWR QLTVREGRKP GQIDADNSET SISEVMLMVQ VCTLGSDEGQ VKEELHRLAQ 420 TFSAGSTAES PPLPLTTLVI QDHTGISNAA PSDAPLRYIF LHRGGDCGLE IADDVVEPRI 480 HDHISNLRFS ISPSAFFQVN TLAAESLYSL AGDWADLGPD TLLFDVCCGT GTIGLTLAHR 540 VGMVVGIEMN ASAVSDAERN AEANGIKNCR FVCGKAEDVI GSLMKEYLSL PEKQDENRET 600 SENNESGVNS AEENINSVDG VVVAENSSVV NHENGHAVSG CSKDEAKLEK DSTPQSSSNP 660 MRQFKNVVAI VDPPRVGLHP TVIKVLRTQS RLRRLVYISC NPDSLVANAI ELCTPSPDKS 720 EKGNNKNNRG WRNMSAAGLA RHRSKSMPES EPFKPVKAMA VDLFPHTPHC ELVMLLER

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MAEIPPTETL TSVEHQDSTD QPNPSVSPPP PSAEGINLPE KRKREGEPEP EPSADKAKHP  60
LWKTSLCSYF RRSGELCSHG DTCRYAHGED ELRPRPNNTW DPTSERAKKM AKTNDQDKAV  120
EEGGIMMTEA LEEDGEESSS GLSKCIVNLP MKWSSDNFRF FLNEQKLDGK TVGNNRTLKV  180
SDVIQRPFEK NNKAALPEKP SPDNDDENDS VLPSDSASKA RSARDAVTPL AHMSYSDQLE  240
HKKNSLAQIL KRLTRNARKA CPNGISLPEW ILNAREIGGL PCKLEGIIES PLVNGYRNKC  300
EFSVGNSLQG KHTVGFLLGN FREGVTAVEE PVDCPNVSRI ACKYAAIFQE FLQQSCLPIW  360
NRLNNSGFWR QLTVREGRKP GQIDADNSET SISEVMLMVQ VCTLGSDEGQ VKEELHRLAQ  420
TFSAGSTAES PPLPLTTLVI QDHTGISNAA PSDAPLRYIF LHRGGDCGLE IADDVVEPRI  480
HDHISNLRFS ISPSAFFQVN TLAAESLYSL AGDWADLGPD TLLFDVCCGT GTIGLTLAHR  540
VGMVVGIEMN ASAVSDAERN AEANGIKNCR FVCGKAEDVI GSLMKEYLSL PEKQDENRET  600
SENNESGVNS AEENINSVDG VVVAENSSVV NHENGHAVSG CSKDEAKLEK DSTPQSSSNP  660
MRQFKNVVAI VDPPRVGLHP TVIKVLRTQS RLRRLVYISC NPDSLVANAI ELCTPSPDKS  720
EKGNNKNNRG WRNMSAAGLA RHRSKSMPES EPFKPVKAMA VDLFPHTPHC ELVMLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein