PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY40123.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 213aa MW: 22512.3 Da PI: 8.7192

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY40123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.4	9.9e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPrGA++V+Ca+C+ + TEY40123.1 7 CTGCRTVLLYPRGATNVCCAICNVI 31 9*********************986 PP
2	zf-LSD1	38.6	1.7e-12	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA sVRC++C+tV TEY40123.1 46 CGGCRTLLMHARGAASVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.6	2.7e-15	94	118	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ TEY40123.1 94 CGNCHTMLMYPAGAPSVKCAVCHFI 118 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MQSQIVCTGC RTVLLYPRGA TNVCCAICNV ITAVPPAGME MAQLICGGCR TLLMHARGAA 60 SVRCSCCHTV NLVPAPAAPQ APPPASNNIA HVNCGNCHTM LMYPAGAPSV KCAVCHFITN 120 VNVSAVLSLL CSLSLTRTFE LKKGKHTRNG RILEPHRINA KNVRRNILGN EEPLLSPSSA 180 PSQSHNQTVV VHNPMTVDES GKLVNNVVVG VTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	9e-52	LSD family protein