PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY39532.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 535aa MW: 57876.1 Da PI: 6.8706

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY39532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	242	262	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C Gd C +aHg TEY39532.1 242 PCPDFKK-GACGKGDACEYAHG 262 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MDTNSGFGSE IQQKSCSKLL ELAAMDDLAG LIHEIEEKSV DVNESRFWYG RSFGSKKMGF 60 EERTPIMIAS LYGSTEILSY LIENCKADVN KACGSDGATA LHCAAAGGAW SSVEIVELLI 120 SASADINAVD AIGRRAGELI APCVKSSIGS RRRRLETLLN GFAAEEERIC EEAPEKKEYP 180 IDVPLPDINN GVYGSDEFRM YSFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKHAYTC 240 VPCPDFKKGA CGKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCARKVCF FAHRTDELRP 300 LYASTGSAMP SPKSFSAASL DVAAAISPLS LGSPALTPPS SPMWQSKGSL TAPLALQLPS 360 SRLRTSSAAG DLNPTNLDDL FQIHLQGMSP SPKVNGFGHL RASYPSNNAG AAAYGFESAA 420 AAVMNSRSSA FSKRSQSFGF RQSNSSGVTP PPPSKLSKWG SGAGNVDWGF NGEDASKLRK 480 SASFGIRSAG AANPSLEEPE WVNALVRDVP QRRGGLEPMP HWIDQMYVEQ EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MDTNSGFGSE IQQKSCSKLL ELAAMDDLAG LIHEIEEKSV DVNESRFWYG RSFGSKKMGF  60
EERTPIMIAS LYGSTEILSY LIENCKADVN KACGSDGATA LHCAAAGGAW SSVEIVELLI  120
SASADINAVD AIGRRAGELI APCVKSSIGS RRRRLETLLN GFAAEEERIC EEAPEKKEYP  180
IDVPLPDINN GVYGSDEFRM YSFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKHAYTC  240
VPCPDFKKGA CGKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCARKVCF FAHRTDELRP  300
LYASTGSAMP SPKSFSAASL DVAAAISPLS LGSPALTPPS SPMWQSKGSL TAPLALQLPS  360
SRLRTSSAAG DLNPTNLDDL FQIHLQGMSP SPKVNGFGHL RASYPSNNAG AAAYGFESAA  420
AAVMNSRSSA FSKRSQSFGF RQSNSSGVTP PPPSKLSKWG SGAGNVDWGF NGEDASKLRK  480
SASFGIRSAG AANPSLEEPE WVNALVRDVP QRRGGLEPMP HWIDQMYVEQ EQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-150	C3H family protein