PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY37295.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 303aa MW: 32909.6 Da PI: 7.1552

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY37295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.1	2.5e-12	118	142	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt L YP GA++V+Ca+C+ V TEY37295.1 118 CSGCRTFLLYPSGATNVCCAICNVV 142 ***********************98 PP
2	zf-LSD1	39.9	7.2e-13	157	181	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV TEY37295.1 157 CGGCRTLLMHARGATSVRCSCCHTV 181 ************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MKRIFQQFDV DRDGDLDREE MTELVVVVNP RVNLELNASE EEAASSSSVV MEPHKRQRTA 60 AWAAFPNRGI VFDDTWNLVD DLESLINRNY RVSRTAIRQF CRSDKIFVSA YMQSQVVCSG 120 CRTFLLYPSG ATNVCCAICN VVNSVPPPGM EMAQLICGGC RTLLMHARGA TSVRCSCCHT 180 VNLVPAVSPP SNVAHVNCGN CHTMLMYHAG APSMGDTSVP VPVNIPAGNS NSAPAHSTST 240 VTTADSHNQT VVVQNPMTLD ESGNLVRSSF NLSFHIPYCG TISRKMIKSV LPQVTNVVVG 300 ITT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-45	LSD family protein