PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TEY37236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 50144.5 Da PI: 8.3559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.2e-12 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+F+H+ TEY37236.1 50 PGEPDCIYYLRTGSCGYGSNCRFNHP 75 5789*********************8 PP | |||||||
2 | zf-CCCH | 29.2 | 1.6e-09 | 139 | 158 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+++H++ TEY37236.1 139 HYLKTGTCKYGSTCRYHHPK 158 8*****************96 PP | |||||||
3 | zf-CCCH | 34.4 | 3.8e-11 | 178 | 201 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f++rtG CkyG CkF+H++ TEY37236.1 178 KPCPFYMRTGLCKYGYACKFHHPQ 201 69********************97 PP | |||||||
4 | zf-CCCH | 36.8 | 6.5e-12 | 302 | 327 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f++ G CkyG+ Ck++H++ TEY37236.1 302 DQPECRYFMEHGSCKYGSECKYHHPR 327 689*********************96 PP | |||||||
5 | zf-CCCH | 32.6 | 1.3e-10 | 347 | 372 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++ +G+C+yG+ C+F H+ TEY37236.1 347 PGQPVCSYYSLYGICNYGPACRFDHP 372 5789*********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 459 aa Download sequence |
MPGNRKVSRI DSTSDRVVGA NFEAMRRLKV EESDENGGAG DERGSYPDRP GEPDCIYYLR 60 TGSCGYGSNC RFNHPSSAEQ VYGVKAGSEL PERAGQPDCG VILRFDFFSS SFGYNLAIVS 120 VRVVLNFQAK LDKYVVSQHY LKTGTCKYGS TCRYHHPKDR QADFLLNMLG LPMRQDAKPC 180 PFYMRTGLCK YGYACKFHHP QPTLAAPNAV PVMGPVYGSA GSAVVPSSGV SSASFPGAPL 240 SKATYFASSL QVPQSYMPLF LPQSQGWNTY MGNASPLPFT SVLTGPVPNG QQSVSYLPER 300 PDQPECRYFM EHGSCKYGSE CKYHHPREKL SPLVSTSVVP LGLPLRPGQP VCSYYSLYGI 360 CNYGPACRFD HPYGLSVPPT AFAYPPLAPY QRIASLVPVA DGSPAKSSKL SDWINKETTA 420 INKHHQNSNT KSLGESLDQS DSLPHSSKAS PDVHHDKSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 4e-79 | C3H family protein |