PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY34486.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 323aa MW: 36109.4 Da PI: 7.7374

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY34486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.7e-10	91	116	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C f + GtC+ G++C+FaHgp TEY34486.1 91 YKTRICAKFTE-GTCRNGEQCTFAHGP 116 9********.***********96 PP
2	zf-CCCH	27.2	6.9e-09	152	175	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ ++ + +C+yGd+C+F H+ TEY34486.1 152 MKICKKYYNGEECPYGDKCNFLHD 175 579****66**********7 PP
3	zf-CCCH	34.1	4.5e-11	218	242	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k+++C+++ G C+yG+rC+FaHg TEY34486.1 218 WKMKICSRWEM-GLCNYGERCHFAHG 242 899******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MSFPDPTQPP NPFVSPPYSG GDAATYWPQF WAGSDQHQMQ QHPDMMQQFH QSKKPRTSEK 60 APNFPPFQPM NQRINQTNPP IINKGTSNIF YKTRICAKFT EGTCRNGEQC TFAHGPDDLR 120 EPPPNWQEII REKERGNGGG GWGDDQRMIH RMKICKKYYN GEECPYGDKC NFLHDRPSPS 180 LNKLKVEMPG QRESSAISIG VTGDARGNAG ELDQASGWKM KICSRWEMGL CNYGERCHFA 240 HGNSDLRFSG SINEGEIAAT TDAVSAQGKV SSVSAFPAME AAAAPVAGEK RISKWNAKKK 300 INRIYADWLD DLTPPHLSPE DMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	7e-59	C3H family protein