PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TEY33056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21542.6 Da PI: 7.9976 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92 | 6.8e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ ++q +++ +v+k+FG++ ++++++a+p+++r+++++sl++eA r+ +Pv+Gavg++ +++++++q+++e+ TEY33056.1 2 SCNGCRVLRKGCSETCILRPCLqwidsTEAQGHATVFVAKFFGRAGLMSFISAVPHSQRPALFQSLLFEAAGRTVNPVNGAVGLLGTGNWHVCQAAVET 100 6*********************9998777889****************************************************************999 PP DUF260 95 all 97 +l+ TEY33056.1 101 VLR 103 876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence |
MSCNGCRVLR KGCSETCILR PCLQWIDSTE AQGHATVFVA KFFGRAGLMS FISAVPHSQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLGTGN WHVCQAAVET VLRGGALKPL PELLGGASAP 120 DDASDCTDHS PQKRRRLPEE TAAPKVAQLA DLDLSLTPGF RGGDLPEKPR RLGSPSMNSE 180 ESVTTTCGDR RANEVKLLNL FS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 133 | 137 | KRRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-80 | LBD family protein |