PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY30352.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

LSD

Protein Properties

Length: 551aa MW: 62229.3 Da PI: 7.4379

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY30352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.2	1.1e-12	327	351	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+Ca+C+ V TEY30352.1 327 CSGCRSLLMYPSGATNVCCAVCNSV 351 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MPYVDRQLPD SCLEMNNSWR SVTYMVCWAI VEAHEPERVV RQSGGTPFIP ELRDWGFNET 60 HFKTNRRGKA KTNWAVQNKT YIQHWERRSE YVTNHYMEPL ADHEQVIRIR QYMEWYFKIT 120 ITYITQPGRL PGVGMNTVAS SSTLQAETLA RVFHLSRGFD PEDAVRLLHE INSLALNCLT 180 DCGESERTVI PATQRTDVDM SRGFIRRARG VGQRGIRTGG HGYSRHSRMS QDMPGSSQAG 240 HEKNVNSDDN IDLDAIIDNF AAAPELQNPP APDPSSWFPT CLWWCRERSR LGVRKRQNAG 300 SEEEGLLPRA DQTPDRTRRG MQSQVVCSGC RSLLMYPSGA TNVCCAVCNS VTTIPPQGYF 360 WISNLVSNSV VGAWMCVCVC VMGKAMIKME LQLPLLVLMN GNGPTDMWRL QYVIDVYTGC 420 YQCEMFVEPP NAAIHIFKHS LWVLSIDHLV SVLCCAIISL IHAGRWEMLG SHFPCIGQSV 480 LPLQHRCLLV QRLVLIFDHV FLEPECFSNY GSMQPLPNPQ SQTVVVENPM SVDKSGKLVS 540 NVVVGVTTDK K

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MPYVDRQLPD SCLEMNNSWR SVTYMVCWAI VEAHEPERVV RQSGGTPFIP ELRDWGFNET  60
HFKTNRRGKA KTNWAVQNKT YIQHWERRSE YVTNHYMEPL ADHEQVIRIR QYMEWYFKIT  120
ITYITQPGRL PGVGMNTVAS SSTLQAETLA RVFHLSRGFD PEDAVRLLHE INSLALNCLT  180
DCGESERTVI PATQRTDVDM SRGFIRRARG VGQRGIRTGG HGYSRHSRMS QDMPGSSQAG  240
HEKNVNSDDN IDLDAIIDNF AAAPELQNPP APDPSSWFPT CLWWCRERSR LGVRKRQNAG  300
SEEEGLLPRA DQTPDRTRRG MQSQVVCSGC RSLLMYPSGA TNVCCAVCNS VTTIPPQGYF  360
WISNLVSNSV VGAWMCVCVC VMGKAMIKME LQLPLLVLMN GNGPTDMWRL QYVIDVYTGC  420
YQCEMFVEPP NAAIHIFKHS LWVLSIDHLV SVLCCAIISL IHAGRWEMLG SHFPCIGQSV  480
LPLQHRCLLV QRLVLIFDHV FLEPECFSNY GSMQPLPNPQ SQTVVVENPM SVDKSGKLVS  540
NVVVGVTTDK K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-14	LSD family protein