PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY29481.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

Trihelix

Protein Properties

Length: 496aa MW: 56312.7 Da PI: 8.6514

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY29481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.6	1.9e-14	27	76	36	87
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +km+e gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++fdqlea TEY29481.1 27 RKMAELGFQRSAKKCKEKFENVYKYHKRTKDGRASK--SDGKTYRFFDQLEA 76 79******************************97..45567*****85 PP
2	trihelix	104.4	8.5e-33	340	425	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+ ++++++++ k+plWee+s +m + g++rs+k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a TEY29481.1 340 RWPKAEVEALINLRTGLDTKYQENGPKGPLWEEISTAMGKMGYNRSSKRCKEKWENINKYFKKVKESSKKR-PDDSKTCPYFHQLDA 425 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MCKRKRNWRN EFDLNLIDEF GRVVVIRKMA ELGFQRSAKK CKEKFENVYK YHKRTKDGRA 60 SKSDGKTYRF FDQLEALENA PPPPFTPPPP PRPMAVSSLP MPPLSQIAAT VPSTCSPTPL 120 TVLPPPIHTS DRLVMNSAPF HPPPQPRSDS ASTSSTSSDE DIQRRRGKKR KWKDFFQRLM 180 TDVVHKQEDL QRKFLDTLER RERERVVREE AWRMQEMARM NREHDFLAQE RSIAAEKDAA 240 VIAFLQKLTD QNNIPIPIQI PTPITNTTTT NVVPTTPAMQ PQPQPPLPPQ QTAAVPVPVQ 300 VPEPILVPVP EPERTAKVPD APRADNSGGG DGSNSASSSR WPKAEVEALI NLRTGLDTKY 360 QENGPKGPLW EEISTAMGKM GYNRSSKRCK EKWENINKYF KKVKESSKKR PDDSKTCPYF 420 HQLDAIYKER AKTDAVVSIN AEPIMARPEQ QWPLTEQQNP ALPLPDHESE NNDDDDDSDE 480 DEGGDYKMVA NKQPPE

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MCKRKRNWRN EFDLNLIDEF GRVVVIRKMA ELGFQRSAKK CKEKFENVYK YHKRTKDGRA  60
SKSDGKTYRF FDQLEALENA PPPPFTPPPP PRPMAVSSLP MPPLSQIAAT VPSTCSPTPL  120
TVLPPPIHTS DRLVMNSAPF HPPPQPRSDS ASTSSTSSDE DIQRRRGKKR KWKDFFQRLM  180
TDVVHKQEDL QRKFLDTLER RERERVVREE AWRMQEMARM NREHDFLAQE RSIAAEKDAA  240
VIAFLQKLTD QNNIPIPIQI PTPITNTTTT NVVPTTPAMQ PQPQPPLPPQ QTAAVPVPVQ  300
VPEPILVPVP EPERTAKVPD APRADNSGGG DGSNSASSSR WPKAEVEALI NLRTGLDTKY  360
QENGPKGPLW EEISTAMGKM GYNRSSKRCK EKWENINKYF KKVKESSKKR PDDSKTCPYF  420
HQLDAIYKER AKTDAVVSIN AEPIMARPEQ QWPLTEQQNP ALPLPDHESE NNDDDDDSDE  480
DEGGDYKMVA NKQPPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	42	KRKRNWRNEFDLNLIDEFGRVVVIRKMAELGFQRSAKKCK
2	163	171	QRRRGKKRK
3	165	171	RRGKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-45	Trihelix family protein