PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY29473.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 798aa MW: 89175.6 Da PI: 6.6902

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY29473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	227	248	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr+f + G C+ Gd CkF+H TEY29473.1 227 VPCRNFVK-GRCRWGDACKFSHH 248 59****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MGERRKRKSL WSEEAVTKPF TYPSHDSEHN HEFPASGSHG VPKFRYHSGH PSMESIHEDP 60 VAWMNDSYPK GRESAYEEKG IGGENSYYQD MSPEFKYNQY PEDDRSHSRS EARGWTRSRS 120 PLGDYKHQAS GWSDRRILPE MATEGDFASG RGRRDGFSKH FHPKNTSHRD GGLGGGDTSE 180 SRRNRADHGN ESKQSYSRGP RIELRGDVSD PYHGEDEQFQ HKSRSAVPCR NFVKGRCRWG 240 DACKFSHHDE TSVEGTKLSS STYRNRNPPC KYFLAGNCDR DNCKFSHEDP NFNRLEGRLG 300 KVNSDRSSRE NDRGSRDNDR GSRDNDRHSH DKVNKRDGPR WEPWDDVGGI SDDIGRNSSA 360 VTVTDSTLDN RMSHGLGNEN INWGIPQHTN ISAPSYDGDV GTTESVIEEN IMAKQDVLAF 420 HDLQLQNLDG TNKLQVEQMF PSNAWQQNVP PVLHIQHQNL GVVENNVVSS FHSDIINEVK 480 DSRNATVPAF ISAQNSHQNG ESVLPAGYSS IPKEAVCKEM PALNGAEMHQ VANLNLSQKL 540 QNAIQMAGMT ETSTLLPFPN LTSEQSAQYA NTLLSAALQH VAPVLNQKFE NQHSTKPPVE 600 EVSNSTGMVL STSNASGHVP LDGTANLQLN PVTVSHDPIS SVENGRNSNE HEGNQVPSAN 660 NSEIDHPGRP HKPQETAREN PECDEVKVGT GEQSKGVQDG KQSETLDSHG KVDESTANKD 720 DKGMRLFKNS LVEFVKDKLK PKWKEGRMSR DVHKTIVKKV VDKITSSIQT DHVPKTQEKV 780 EQYLSFSEPK ITKLVQVK

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MGERRKRKSL WSEEAVTKPF TYPSHDSEHN HEFPASGSHG VPKFRYHSGH PSMESIHEDP  60
VAWMNDSYPK GRESAYEEKG IGGENSYYQD MSPEFKYNQY PEDDRSHSRS EARGWTRSRS  120
PLGDYKHQAS GWSDRRILPE MATEGDFASG RGRRDGFSKH FHPKNTSHRD GGLGGGDTSE  180
SRRNRADHGN ESKQSYSRGP RIELRGDVSD PYHGEDEQFQ HKSRSAVPCR NFVKGRCRWG  240
DACKFSHHDE TSVEGTKLSS STYRNRNPPC KYFLAGNCDR DNCKFSHEDP NFNRLEGRLG  300
KVNSDRSSRE NDRGSRDNDR GSRDNDRHSH DKVNKRDGPR WEPWDDVGGI SDDIGRNSSA  360
VTVTDSTLDN RMSHGLGNEN INWGIPQHTN ISAPSYDGDV GTTESVIEEN IMAKQDVLAF  420
HDLQLQNLDG TNKLQVEQMF PSNAWQQNVP PVLHIQHQNL GVVENNVVSS FHSDIINEVK  480
DSRNATVPAF ISAQNSHQNG ESVLPAGYSS IPKEAVCKEM PALNGAEMHQ VANLNLSQKL  540
QNAIQMAGMT ETSTLLPFPN LTSEQSAQYA NTLLSAALQH VAPVLNQKFE NQHSTKPPVE  600
EVSNSTGMVL STSNASGHVP LDGTANLQLN PVTVSHDPIS SVENGRNSNE HEGNQVPSAN  660
NSEIDHPGRP HKPQETAREN PECDEVKVGT GEQSKGVQDG KQSETLDSHG KVDESTANKD  720
DKGMRLFKNS LVEFVKDKLK PKWKEGRMSR DVHKTIVKKV VDKITSSIQT DHVPKTQEKV  780
EQYLSFSEPK ITKLVQVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-10	C3H family protein