PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY26973.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 334aa MW: 37673.8 Da PI: 7.6019

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY26973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.3	7.1e-15	253	278	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yG++C+FaHg TEY26973.1 253 FKTELCNKWEETGACPYGENCQFAHG 278 79***********************8 PP
2	zf-CCCH	20.4	8.9e-07	291	316	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ TEY26973.1 291 YKTEVCRMVLAGDACPYGHRCHFRHS 316 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MQKENTSFSA LTTTDASPVC FSRSNLFLSN SPDDYLNSDA SIYSSLFQNY TTDAASFDIG 60 DSERRCHDSS SILEYQQLYN RYTICLSLLR DSIEEVDALR LENDSLRVSN ADLSRRVAML 120 FSRTRLLSEF SHLSVSSPPA AAPVPLPIPV PVHVPAPQPL AECNRFERRS PEKTVLPKSI 180 SVRSKGYLKL VNRSGRETNI QKTVSQPCLP TLTCAIFPVA LLACNRKQQR VYVPGAKEEE 240 DALEFDVYNQ GMFKTELCNK WEETGACPYG ENCQFAHGIK ELRPVIRHPR YKTEVCRMVL 300 AGDACPYGHR CHFRHSLTEE EKLMAAPMRT PPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	4e-66	C3H family protein