PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY26581.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 348aa MW: 38124.9 Da PI: 7.4749

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY26581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.5e-10	96	120	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C+ f++ GtC+y +C+FaH+ TEY26581.1 96 YKTKMCCKFRA-GTCPYVTNCNFAHS 120 9********.***********8 PP
2	zf-CCCH	17.4	7.9e-06	167	192	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ TEY26581.1 167 YKGRHCKKFYTEEGCPYGENCTFLHD 192 78888********************7 PP
3	zf-CCCH	43.5	5.1e-14	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg TEY26581.1 237 WKTRICNKWELTGYCPFGSKCHFAHG 262 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MAYRRENRVS SGDVVHVLSG SSRNPVNESW ESDQAVWATE DDYGMWNGEA SFDTNSNSSY 60 DGARAGSEPP SKRSRGSNTG DGAASSRSKA IGKMFYKTKM CCKFRAGTCP YVTNCNFAHS 120 VEELRKPPDN WQEIVAAHEE ERGSSSEPRE EFQIPIVGVS DETQRSYKGR HCKKFYTEEG 180 CPYGENCTFL HDEQSKARES VAISLGPGSG NANANGNGGG SGYGGSVSGP TLKPSNWKTR 240 ICNKWELTGY CPFGSKCHFA HGVAELHNYS GGPTDLEAKN LSTPDAKQPV RTPADSFIAA 300 LPHTEGYHMG IRPQRLSSTI QRSGLRPNQK WKGPDKISKI YGDWIDDL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MAYRRENRVS SGDVVHVLSG SSRNPVNESW ESDQAVWATE DDYGMWNGEA SFDTNSNSSY  60
DGARAGSEPP SKRSRGSNTG DGAASSRSKA IGKMFYKTKM CCKFRAGTCP YVTNCNFAHS  120
VEELRKPPDN WQEIVAAHEE ERGSSSEPRE EFQIPIVGVS DETQRSYKGR HCKKFYTEEG  180
CPYGENCTFL HDEQSKARES VAISLGPGSG NANANGNGGG SGYGGSVSGP TLKPSNWKTR  240
ICNKWELTGY CPFGSKCHFA HGVAELHNYS GGPTDLEAKN LSTPDAKQPV RTPADSFIAA  300
LPHTEGYHMG IRPQRLSSTI QRSGLRPNQK WKGPDKISKI YGDWIDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-112	C3H family protein