PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY24282.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 636aa MW: 70477 Da PI: 4.4604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY24282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	275	293	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C f+a+ G+C +G +C+F H TEY24282.1 275 CEFHAK-GWCIRGKSCRFLH 293 999999.************* PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MVPSSAVVSP KPSIPEGDDE EYEIVYEEIE VEEEIEVEEE VEEEDDVGAD HVENGGDVEI 60 GEDLTASSLK NLETACLSRD TGYEFLSDFR WSSFSEMFLS PHRSPFLLSA LTSPVLLYYS 120 MDQSSNIFLE IYTGKILELD EQKHDRQSSS FTEEFLVSKI GDVKPFESRE KEELYGNGGE 180 ISTYNQEKIP LNDSTEVNHA KTSPSIGDVN ATSTMDNASG ENDSAIASIM EKTDQTALEG 240 VGNISPRLHA AKIRFRNPSP SAEIDRESKK IRMVCEFHAK GWCIRGKSCR FLHTKEAPDA 300 VIIKSEALGR EAASSNAFIP PLQSGDTNLS SETEKLVLPE DGTYPGAPTR EDRSVRHNLY 360 LDNCQNYGSP PVQGILNARD GLEHHAYISS SMQQSIPQAF RSESDSLLRD GSFREPKPPK 420 VEATFSSFDW QLSALFCPSY EITRSILLKE CGYDSADQKY VMDIQAIFSH SDQGSSDKNV 480 TVQSSSPQGE EKLLNYVLAG DNGKENILSS SNDDKVKLNK TVDGTISEVG GSGTKHDIEA 540 DFRQDDHVQS DTKAFKYFQS ALIESVKELV KPTWREGFLS KDAHKLIVKK AVNKVLSSLP 600 AHQIPSTEES VQSYLSSSQP KLAKLVEGYL NIYGKI

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MVPSSAVVSP KPSIPEGDDE EYEIVYEEIE VEEEIEVEEE VEEEDDVGAD HVENGGDVEI  60
GEDLTASSLK NLETACLSRD TGYEFLSDFR WSSFSEMFLS PHRSPFLLSA LTSPVLLYYS  120
MDQSSNIFLE IYTGKILELD EQKHDRQSSS FTEEFLVSKI GDVKPFESRE KEELYGNGGE  180
ISTYNQEKIP LNDSTEVNHA KTSPSIGDVN ATSTMDNASG ENDSAIASIM EKTDQTALEG  240
VGNISPRLHA AKIRFRNPSP SAEIDRESKK IRMVCEFHAK GWCIRGKSCR FLHTKEAPDA  300
VIIKSEALGR EAASSNAFIP PLQSGDTNLS SETEKLVLPE DGTYPGAPTR EDRSVRHNLY  360
LDNCQNYGSP PVQGILNARD GLEHHAYISS SMQQSIPQAF RSESDSLLRD GSFREPKPPK  420
VEATFSSFDW QLSALFCPSY EITRSILLKE CGYDSADQKY VMDIQAIFSH SDQGSSDKNV  480
TVQSSSPQGE EKLLNYVLAG DNGKENILSS SNDDKVKLNK TVDGTISEVG GSGTKHDIEA  540
DFRQDDHVQS DTKAFKYFQS ALIESVKELV KPTWREGFLS KDAHKLIVKK AVNKVLSSLP  600
AHQIPSTEES VQSYLSSSQP KLAKLVEGYL NIYGKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-21	C3H family protein