PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TEY14649.1

Organism

Salvia splendens

Taxonomic ID

180675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace

Family

C3H

Protein Properties

Length: 709aa MW: 77537.9 Da PI: 6.1759

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TEY14649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg TEY14649.1 281 PCPDFRK-GACRRGDMCEYAHG 301 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MSYSFLNVET EDTFTSLLEH AANNDLEGFK KFIGCNPSSV DEVGLWYGRQ NGSSQMVLQH 60 LTPLMVAATY GSIDVLKLIV SLPEVDVNRD CGVDNSTALH CAASGGSVNA VDAVKLLLAS 120 GADPNLTDAN GRRPLDVVVV SPKSQATKYS IQMMLTMGTS FEEEHHLRVL IGASSLDSPP 180 LSPSLANGSP RSPELVPSPE GMKSNDLPAL PAPEKKEYPV DPSLPDIKNS IYSTDEFRMF 240 SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNASAANA 360 MDFTAAMSLL PGSPSSVPAM SPSPFTPPMS PSANSISNPS WQFQQNVPAL HLPGSNFQSS 420 RLRSSLHARD IPFEDMNAFG DMDLQQQQQQ LLNELPHLSQ SSISANMMSR SVRPKTLTPS 480 NLEEIFSVES SSPRYSDQTL ASTVFSPTQK SAVLNQFQQQ QQSMLSPIKT TFSPRNVDHT 540 LLPGPFGVPS SGRMSPRAVE PISPMSARVS MLARQEKQHQ QFPSLSSRDL GSNAAAAVAS 600 MEGNWSKWGS PNGQPEWGVN ADDFGKLKRS SSFDLLNHGE EPDLSWVHSL VKESPQDMKE 660 KSVPHVSGAT GSATSSGEGV HLNNEIEQAD QSVLGAWLEQ MQLDQLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MSYSFLNVET EDTFTSLLEH AANNDLEGFK KFIGCNPSSV DEVGLWYGRQ NGSSQMVLQH  60
LTPLMVAATY GSIDVLKLIV SLPEVDVNRD CGVDNSTALH CAASGGSVNA VDAVKLLLAS  120
GADPNLTDAN GRRPLDVVVV SPKSQATKYS IQMMLTMGTS FEEEHHLRVL IGASSLDSPP  180
LSPSLANGSP RSPELVPSPE GMKSNDLPAL PAPEKKEYPV DPSLPDIKNS IYSTDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNASAANA  360
MDFTAAMSLL PGSPSSVPAM SPSPFTPPMS PSANSISNPS WQFQQNVPAL HLPGSNFQSS  420
RLRSSLHARD IPFEDMNAFG DMDLQQQQQQ LLNELPHLSQ SSISANMMSR SVRPKTLTPS  480
NLEEIFSVES SSPRYSDQTL ASTVFSPTQK SAVLNQFQQQ QQSMLSPIKT TFSPRNVDHT  540
LLPGPFGVPS SGRMSPRAVE PISPMSARVS MLARQEKQHQ QFPSLSSRDL GSNAAAAVAS  600
MEGNWSKWGS PNGQPEWGVN ADDFGKLKRS SSFDLLNHGE EPDLSWVHSL VKESPQDMKE  660
KSVPHVSGAT GSATSSGEGV HLNNEIEQAD QSVLGAWLEQ MQLDQLMAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein