PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TEY11976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia; Calosphace; core Calosphace
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Family | LSD | ||||||||
Protein Properties | Length: 226aa MW: 23836.8 Da PI: 8.1771 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.2 | 1.1e-12 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V TEY11976.1 29 CSGCRTVLLYPSGATNVCCAICNMV 53 ***********************88 PP | |||||||
2 | zf-LSD1 | 40.4 | 4.8e-13 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV TEY11976.1 68 CGGCRTLLMHARGATSVRCSCCHTV 92 ************************9 PP | |||||||
3 | zf-LSD1 | 48.5 | 1.5e-15 | 109 | 133 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ TEY11976.1 109 CGNCHTMLMYPAGAPSVKCAICHFI 133 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MYGIYVFGRA AFNLILDFGL ADMQSQVVCS GCRTVLLYPS GATNVCCAIC NMVTSVPPPG 60 MEMAQLICGG CRTLLMHARG ATSVRCSCCH TVNLVPAAVP PNNVAHVNCG NCHTMLMYPA 120 GAPSVKCAIC HFITNVNMGD TRVPIPVNRP AGNSNSAPTQ STSTVTTAHS HNQTVVVQNP 180 MTVDESGKLV SPSTLGFAFN CMVQFHVKMI KSVLQQVSNV VVGVTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-62 | LSD family protein |