PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G34766
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 410aa    MW: 46366.1 Da    PI: 9.5995
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G34766genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.88.8e-1475129256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +k++++  + +++Lee+  kn+yp+ +++ee+A++l L+ +q+++W qN+R+k++
  Ro07_G34766  75 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTKRR 129
                  677899999*******999**********************************98 PP
2START34.54.8e-12258314113173
                  EEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START 113 RyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                   y+rq  ++ wv+vd ++  e +   + s++++ ++pSg+li+ +++g+skvtw+e+++++
  Ro07_G34766 258 KYCRQYYEDLWVVVD-ADLKEIF---QDSLAKCYRRPSGCLIQVLPDGYSKVTWIENAEVN 314
                  599**99********.3334444...5589*****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP SNPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTKRRA EFFRSENDAL KKEVSKLHVK LKGYEQAFAN TTCLVCGGPR ITTKGLDYRP  180
QVLDAGPNIE KGKSPLGFSE AFQQPRKDFL HTKNGQDLVA KLVFAAMEEL VMMAQAGAPL  240
WISAKTVDIQ FNMIFSTKYC RQYYEDLWVV VDADLKEIFQ DSLAKCYRRP SGCLIQVLPD  300
GYSKVTWIEN AEVNMEDPGV PKGTIFSTVS SLWRFAIIPN VAATKGVGGS HGTNTDGTVL  360
TIAIQKVVHL GRNLKNFNKP LTEAKKRIRA IIAGITRAAL KDHQQLAGLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384390AKKRIRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.28e-27HD-ZIP family protein