PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G34726
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 295aa    MW: 33504.1 Da    PI: 7.5378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G34726genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd+ l +++ ++G g+W++++   g+ R +k+c++rw +yl
      Ro07_G34726 19 KGLWSPEEDQGLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 66
                     678*******************************************97 PP
2Myb_DNA-binding551.8e-1772117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
      Ro07_G34726  72 RGTFSKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 117
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGCKSSDSPK PKPKPKHRKG LWSPEEDQGL RNYILKHGHG CWSSVPINAG LQRNGKSCRL  60
RWINYLRPGL KRGTFSKQEE ETILTLHHML GNKWSQIAQH LPGRTDNEIK NYWHSYLKKK  120
VAKADEDQDQ MELAQSKSQY TSTSSSDHNL DQPSTSSEKL TSTRNPSYNE SPTLVPQIDH  180
QSHRPSPLPK ILFAEWLSLD HVNGGNISNN ISVDQHNYTP RADHSLEHNF SFNNEATFGS  240
SSFHHAPATH EILNSQFTYD PQDQMPGTGF VDFISGGDLC CDFNLHNDVI NPHWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.18e-62MYB family protein