PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G33271

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 470aa MW: 52149.7 Da PI: 5.2507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G33271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.3e-12	294	339	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Ro07_G33271 294 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINDL 339 799*********************6.....4**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MDDLIISPSS SSSLVSLPQE PTMQQRLQFL VQSQPDLWCY AIFWQASNDV ENGRLTLGWG 60 DGHFRGPKDP TPDLNTTGGL HSDRRKILKG IQSILNDNNP DLDMDNFMAL NGEVPDAEWF 120 YVMSLTRSFS VGDGSVPGKA FATGSLVWLS GAHDLRFNNC ERAKEAQIHG IETLICIPTS 180 NGVVEMGSSA LIGENWGLIQ QTKSLFGSDQ PDPETRPIEF INRNFSFADI GIVAGLTEEK 240 DNSSYKDDRK QVVKKKNGAA PNPNPAFSDS DCQFKKAPKK RGRKPGLGRD TPLNHVEAER 300 QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINDLK AKVDELESQM QRESKKVKVE 360 MADNLDNQST TTTASVEQTQ TVRPDTNGSG LEIEVKIVGS DAMIRVQSEN VNYPSARLMT 420 AMRDLEFQIH HASLSSINEL MLQDIVVKVP ENMRTEEGLK AALVGILDQN

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MDDLIISPSS SSSLVSLPQE PTMQQRLQFL VQSQPDLWCY AIFWQASNDV ENGRLTLGWG  60
DGHFRGPKDP TPDLNTTGGL HSDRRKILKG IQSILNDNNP DLDMDNFMAL NGEVPDAEWF  120
YVMSLTRSFS VGDGSVPGKA FATGSLVWLS GAHDLRFNNC ERAKEAQIHG IETLICIPTS  180
NGVVEMGSSA LIGENWGLIQ QTKSLFGSDQ PDPETRPIEF INRNFSFADI GIVAGLTEEK  240
DNSSYKDDRK QVVKKKNGAA PNPNPAFSDS DCQFKKAPKK RGRKPGLGRD TPLNHVEAER  300
QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINDLK AKVDELESQM QRESKKVKVE  360
MADNLDNQST TTTASVEQTQ TVRPDTNGSG LEIEVKIVGS DAMIRVQSEN VNYPSARLMT  420
AMRDLEFQIH HASLSSINEL MLQDIVVKVP ENMRTEEGLK AALVGILDQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	4e-85	bHLH family protein