PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G26929

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SRS

Protein Properties

Length: 330aa MW: 35085.7 Da PI: 8.4898

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G26929	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186	1.5e-57	119	288	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstkls 92 sg ++C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpa++rrerq + + a + as +++ +kr+r ++ +k+++++s+ + Ro07_G26929 119 SGLKACKDCGNRAKKGCEYTRCRTCCRGRGYDCSTHVRSTWVPASRRRERQMAVTVAVAGGVASGgggegssgSSSVAKRPRVMMPSKNASTASSLSP 216 56789*******************************************999999888777766788888878888899998877777777776666 PP DUF702 93 saeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s + + + lP++v+++avf+c rv+++++ge+e+aYq++v+i+GhvfkG+Lyd+G+++ Ro07_G26929 217 SCSLFLFILM-LflridanlkqsLPDQVRAPAVFKCHRVTAISNGEAEIAYQATVKISGHVFKGLLYDRGVDK 288 6554332222.246678888999**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MLGLRDILLI APTPSSMHQQ IQPISSDHNH PSLPLPSSTA LGVGLGIFPL LTATPCGPNA 60 PTTEGNPDTS RFWSLRTYPE MNPSKQDMLN FGNHGGADGQ QVVESDDGNV NSEGGGDESG 120 LKACKDCGNR AKKGCEYTRC RTCCRGRGYD CSTHVRSTWV PASRRRERQM AVTVAVAGGV 180 ASGGGGEGSS GSSSVAKRPR VMMPSKNAST ASSLSPSCSL FLFILMLFLR IDANLKQSLP 240 DQVRAPAVFK CHRVTAISNG EAEIAYQATV KISGHVFKGL LYDRGVDKKN EYPCISNLHL 300 GSGSNQRNGD SSSPTMPPSN ILNVIMLFDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-41	SRS family protein