PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G26821

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-X1

Protein Properties

Length: 2128aa MW: 240413 Da PI: 8.0842

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G26821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	22.4	2.6e-07	1442	1460	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CHeGpCppC+ Ro07_G26821 1442 CGVHRCSEICHEGPCPPCR 1460 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 2128 aa Download sequence
MGDATAASYN YKMFKCFHRK FKTSEVGPPP DVKEIFSKFA NGGELMSPDQ FRAFLTDHQA 60 EKPNDVTLAD AKRILHEFSL RRQPKDPKHS KDKTPAAVAH HEQGLNLDDF FHFLFEEEFN 120 GPIKRQVHHD MTAPLSHYFI YTGHNSYLTG NQLSSDCSDV PIIKALEKGV KVIELDLWPT 180 SSKEDVQVYH GRTLTTPVTL VKCLKSIKEH AFVKSPYPVV ITFEDHLTTK LRVKVAEMVT 240 QIFGDTLYYP EPEDPMKEFP SPDFLKHRII ISTKPPKVGE GSDRDSSEES ERSDSDKDVE 300 GKPAIDIKPV QSEAPEYVEL ITIHAGKPQG GLKEALAIGD KVRRLSLSEQ KLENAAEDHG 360 TDIVRFTQRN ILRVYPKGTR VTSSNYQPHV GWMHGAQMVA FNMQRHDKSL WLMHGMFRAN 420 GGCGYLKKPG FLMHKGPNDE VFDPKRTLIA TKTLKVKVYM GTGWHLDFSQ THFDTFSPPD 480 FYTKVHIVGV PADCAKHKTR IIEDDWTPVW DEEFTFPLTI PELAILRIEV REYDRSEKDD 540 YGGQTCFPVS ELRTGIRSVP LYDKKGEKYT SVKLLMRFQF ESNLTNRESI IPKKSQNKQQ 600 TDTHSHTSPS PTTGESPRIP APAKSPMSKQ TYRVCFCFRR RFRLAVSEAP TDIKSLFDRY 660 SENGLMTVDH LHRFLTEVQK EEKTKEEAQA VLDESLHEFR HLNIFHRKAL NLEAFFKFLF 720 SDNNPPIPST KEVHHDMNAP LSHYFIHTGH NSYLTGNQLS SDCSDVPIIH ALHRGVRVIE 780 LDIWPNSTKD DVDVLHGGTL TAPVELIKCF RSIKEHAFVA SEYPVVITLE DHLTPNLQAK 840 VAEMITTTFG EVLYTPPGSE CLKEFPSPES LKKRIIISTK PPQEYLEAKA AAEKAAAEAA 900 KDLKRGKSLV DEEAWGKEVP DHKGAIVEDD KNELHEEESN EEEYIDDVDS KSTNNVAPEY 960 KRLIAIHAGK PKGGLVECLK VDPNKVRRLS LSEQQLEKAS ETYGKEIVRF TQRNILRVYP 1020 KGIRVDSSNY NPMIGWSHGA QMVAFNMQGH GRSLWVMQGM FKANGGCGYV KKPDFLLKTG 1080 PHNEVFDPKH KSDVKTTLKV KVYMGEGWYY DFKHTHFDAY SPPDFYARVG IAGVAADTIM 1140 KKTKTLEDNW IPAWDEEFEF PLTVPELAVL RVEVHEYDMS EKDDFGGQTS SESAALDRAH 1200 TYFYSPKIPK MNSPPSDSDT DSDHSQSGSA PLRRHSDLSD SIFRSYLEFT GKSSATNADL 1260 SKIQSFLTSS SSGALSCLIC LERIRPSDPT WSCTSVCFSV FHLFCIQSWA RQASDLSALR 1320 ASTRLPISQS KAAEVSLWNC PKCRVEYTQS QIPKIYWCFC GKLENPPSDD PWILPHSCGE 1380 VCNRPLKHNC GHHCLLLCHP GPCPSCPKLV KAYCFCGSVQ DVRRCGFKNF SCNNACKRKL 1440 ACGVHRCSEI CHEGPCPPCR VRAVYPCQCG KREEERECCE RLNFRCEEPC EKMLGCGQHK 1500 CSKGCHPMEC GPCPFQGKRT CPCGKRVHEG LSCKDAVPLC GATCDKMLSC GYHRCPERCH 1560 RGQCLETCRT VVTKWCRCGS LKKEVPCHQD LACERKCQRL RDCGRHPCKR RCCDGDCPPC 1620 SEICGRKLRC KNHKCPSPCH RGACAPCPVM VTIACLCGVT HFEVPCGTEM DQKPPRCRKP 1680 CPITPLCRHG ANSKPHKCHY GACHPCKLLC EEEYPCGHKC KRRCHGPKPP PNPEYTLKPK 1740 KKKSFHQTEC TPGSPCPPCP ELVWRSCVGQ HFAADRMMVC SDKSLFSCDN LCGNPLRCGN 1800 HFCTKTCHPL KDQSLPSGQQ ARSEPCEVCH LPCEKERAPA CTHPCPLSCH PGDCPACKVL 1860 VKRSCHCGSM VHVFECIYYN SLSEKEQTAV RSCKGPCHRK LPYCTHLCPE TCHPGQCSSP 1920 EKCSKKAAYR SAGSDPKDVP KNQFGLGLIP CESNCKSKQK VVDSEIHSRR PKVVEVKEPD 1980 TDKPAPKRKK RRERVHEATQ ISTLQKIVAN VKRFLLVFTL VVVLVAVSYY GYNGLLWLSD 2040 WMNEEAKKTP PNLIGKGNTL YSNTEFEYST LIFLAASHLG KFLILFQYIY ILRLDTVHRQ 2100 IFPQYWNSKL FLQNSFGLDV TYLKFSQV

Sequence ? help Back to Top

Protein Sequence Length: 2128 aa Download sequence

MGDATAASYN YKMFKCFHRK FKTSEVGPPP DVKEIFSKFA NGGELMSPDQ FRAFLTDHQA  60
EKPNDVTLAD AKRILHEFSL RRQPKDPKHS KDKTPAAVAH HEQGLNLDDF FHFLFEEEFN  120
GPIKRQVHHD MTAPLSHYFI YTGHNSYLTG NQLSSDCSDV PIIKALEKGV KVIELDLWPT  180
SSKEDVQVYH GRTLTTPVTL VKCLKSIKEH AFVKSPYPVV ITFEDHLTTK LRVKVAEMVT  240
QIFGDTLYYP EPEDPMKEFP SPDFLKHRII ISTKPPKVGE GSDRDSSEES ERSDSDKDVE  300
GKPAIDIKPV QSEAPEYVEL ITIHAGKPQG GLKEALAIGD KVRRLSLSEQ KLENAAEDHG  360
TDIVRFTQRN ILRVYPKGTR VTSSNYQPHV GWMHGAQMVA FNMQRHDKSL WLMHGMFRAN  420
GGCGYLKKPG FLMHKGPNDE VFDPKRTLIA TKTLKVKVYM GTGWHLDFSQ THFDTFSPPD  480
FYTKVHIVGV PADCAKHKTR IIEDDWTPVW DEEFTFPLTI PELAILRIEV REYDRSEKDD  540
YGGQTCFPVS ELRTGIRSVP LYDKKGEKYT SVKLLMRFQF ESNLTNRESI IPKKSQNKQQ  600
TDTHSHTSPS PTTGESPRIP APAKSPMSKQ TYRVCFCFRR RFRLAVSEAP TDIKSLFDRY  660
SENGLMTVDH LHRFLTEVQK EEKTKEEAQA VLDESLHEFR HLNIFHRKAL NLEAFFKFLF  720
SDNNPPIPST KEVHHDMNAP LSHYFIHTGH NSYLTGNQLS SDCSDVPIIH ALHRGVRVIE  780
LDIWPNSTKD DVDVLHGGTL TAPVELIKCF RSIKEHAFVA SEYPVVITLE DHLTPNLQAK  840
VAEMITTTFG EVLYTPPGSE CLKEFPSPES LKKRIIISTK PPQEYLEAKA AAEKAAAEAA  900
KDLKRGKSLV DEEAWGKEVP DHKGAIVEDD KNELHEEESN EEEYIDDVDS KSTNNVAPEY  960
KRLIAIHAGK PKGGLVECLK VDPNKVRRLS LSEQQLEKAS ETYGKEIVRF TQRNILRVYP  1020
KGIRVDSSNY NPMIGWSHGA QMVAFNMQGH GRSLWVMQGM FKANGGCGYV KKPDFLLKTG  1080
PHNEVFDPKH KSDVKTTLKV KVYMGEGWYY DFKHTHFDAY SPPDFYARVG IAGVAADTIM  1140
KKTKTLEDNW IPAWDEEFEF PLTVPELAVL RVEVHEYDMS EKDDFGGQTS SESAALDRAH  1200
TYFYSPKIPK MNSPPSDSDT DSDHSQSGSA PLRRHSDLSD SIFRSYLEFT GKSSATNADL  1260
SKIQSFLTSS SSGALSCLIC LERIRPSDPT WSCTSVCFSV FHLFCIQSWA RQASDLSALR  1320
ASTRLPISQS KAAEVSLWNC PKCRVEYTQS QIPKIYWCFC GKLENPPSDD PWILPHSCGE  1380
VCNRPLKHNC GHHCLLLCHP GPCPSCPKLV KAYCFCGSVQ DVRRCGFKNF SCNNACKRKL  1440
ACGVHRCSEI CHEGPCPPCR VRAVYPCQCG KREEERECCE RLNFRCEEPC EKMLGCGQHK  1500
CSKGCHPMEC GPCPFQGKRT CPCGKRVHEG LSCKDAVPLC GATCDKMLSC GYHRCPERCH  1560
RGQCLETCRT VVTKWCRCGS LKKEVPCHQD LACERKCQRL RDCGRHPCKR RCCDGDCPPC  1620
SEICGRKLRC KNHKCPSPCH RGACAPCPVM VTIACLCGVT HFEVPCGTEM DQKPPRCRKP  1680
CPITPLCRHG ANSKPHKCHY GACHPCKLLC EEEYPCGHKC KRRCHGPKPP PNPEYTLKPK  1740
KKKSFHQTEC TPGSPCPPCP ELVWRSCVGQ HFAADRMMVC SDKSLFSCDN LCGNPLRCGN  1800
HFCTKTCHPL KDQSLPSGQQ ARSEPCEVCH LPCEKERAPA CTHPCPLSCH PGDCPACKVL  1860
VKRSCHCGSM VHVFECIYYN SLSEKEQTAV RSCKGPCHRK LPYCTHLCPE TCHPGQCSSP  1920
EKCSKKAAYR SAGSDPKDVP KNQFGLGLIP CESNCKSKQK VVDSEIHSRR PKVVEVKEPD  1980
TDKPAPKRKK RRERVHEATQ ISTLQKIVAN VKRFLLVFTL VVVLVAVSYY GYNGLLWLSD  2040
WMNEEAKKTP PNLIGKGNTL YSNTEFEYST LIFLAASHLG KFLILFQYIY ILRLDTVHRQ  2100
IFPQYWNSKL FLQNSFGLDV TYLKFSQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1721	1743	KRRCHGPKPPPNPEYTLKPKKKK
2	1986	1992	PKRKKRR
3	1988	1994	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein