PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G25681

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARR-B

Protein Properties

Length: 597aa MW: 67087.6 Da PI: 5.7448

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G25681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.5	1.5e-23	187	240	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++Wt+eL +rF++ v+ + G e+A+Pktile+m+v+gLt+e+v+SHLQkYR Ro07_G25681 187 KSKVVWTQELQARFLDSVHFI-GLERAVPKTILEVMNVEGLTRENVASHLQKYRQ 240 6799***************.******************************5 PP
2	Myb_DNA-binding	30.4	9.2e-10	190	239	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ +++d v+ G + +ktI + m+ +g+t++++ s++qky+ Ro07_G25681 190 VVWTQELQARFLDSVHFIGLEraVPKTILEVMNvEGLTRENVASHLQKYR 239 68***********************************************7 PP
3	Response_reg	50	1.6e-17	18	124	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl++ +p+++ + ++l + +v + +++ a l+ ++ +Dli++D+ + +mdG+e+ k+ ree klp i+v++ + e +l+alk+Ga Ro07_G25681 18 VLVIGYDPAFLASVSEFLHLLKH-QVWTYSNPFIAFSALRVRRnfYDLIMTDLYLADMDGFEVQKRVREEF-KLPLIIVSSDDREHVILKALKLGAV 112 788888999999*****9999.99*********999999********************99.********************* PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 +++Kp+ +++ Ro07_G25681 113 HYIVKPVCFNDM 124 ****977666 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MSDNMVLHGQ SDPVKLRVLV IGYDPAFLAS VSEFLHLLKH QVWTYSNPFI AFSALRVRRN 60 FYDLIMTDLY LADMDGFEVQ KRVREEFKLP LIIVSSDDRE HVILKALKLG AVHYIVKPVC 120 FNDMKNLWKF VVNYSDKSRK EISLGEEIES GEKQSSETIS DGDTNGDPEK KNSKRKRSTK 180 EGNAPKKSKV VWTQELQARF LDSVHFIGLE RAVPKTILEV MNVEGLTREN VASHLQKYRQ 240 FLRRVAARIS VSKSDIVDKS QVSRSTFGKR KTSILEQQPI CGQNLSINSN SSNLGRPLSG 300 ANDHYSSTTS VPPFGYRSHP YQPNFRSHFQ TPPQPAFMGF RFQANNAQCN NGLQTQASPL 360 TNHLYGNYNN HGISAGFQYA NNLYNRSWNG TMGFLNYSTS LNTNNNYYGL PMSSAASARS 420 AGINSNPNPN LMVANDNWAS STSGLNTNFV GLVLNDIDQN EHHQDMNNAS PMGDLMFGYN 480 DFSGGEDALS VGFCGITTVE AAASSSNVVD PSRNQNQTDQ DFDDLHDILF NDTNLESVNQ 540 EEGKQVVNYE TSASVNFNRE LIEELEFDWL DLLDATAILE NISLDEDWKK FTDSFLN

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MSDNMVLHGQ SDPVKLRVLV IGYDPAFLAS VSEFLHLLKH QVWTYSNPFI AFSALRVRRN  60
FYDLIMTDLY LADMDGFEVQ KRVREEFKLP LIIVSSDDRE HVILKALKLG AVHYIVKPVC  120
FNDMKNLWKF VVNYSDKSRK EISLGEEIES GEKQSSETIS DGDTNGDPEK KNSKRKRSTK  180
EGNAPKKSKV VWTQELQARF LDSVHFIGLE RAVPKTILEV MNVEGLTREN VASHLQKYRQ  240
FLRRVAARIS VSKSDIVDKS QVSRSTFGKR KTSILEQQPI CGQNLSINSN SSNLGRPLSG  300
ANDHYSSTTS VPPFGYRSHP YQPNFRSHFQ TPPQPAFMGF RFQANNAQCN NGLQTQASPL  360
TNHLYGNYNN HGISAGFQYA NNLYNRSWNG TMGFLNYSTS LNTNNNYYGL PMSSAASARS  420
AGINSNPNPN LMVANDNWAS STSGLNTNFV GLVLNDIDQN EHHQDMNNAS PMGDLMFGYN  480
DFSGGEDALS VGFCGITTVE AAASSSNVVD PSRNQNQTDQ DFDDLHDILF NDTNLESVNQ  540
EEGKQVVNYE TSASVNFNRE LIEELEFDWL DLLDATAILE NISLDEDWKK FTDSFLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	7e-47	ARR-B family protein