PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G24889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25140 Da PI: 6.3666 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 20 | 66 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT Ed+l+ +a + + +W++Ia++++ gR++k++ +++ ++ Ro07_G24889 20 RWTRSEDKLFEQALVSFSEDlpdRWERIAEMVP-GRSPKEVLEHYETL 66 9*****************99*************.***********875 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2.1e-13 | 120 | 165 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++ E++l++ + kq+G+g+W++I+r + +Rt+ q+ s+ qky Ro07_G24889 120 KPWSEIEHKLFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 165 58*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MFQETTPCWA SVTQSATSTR WTRSEDKLFE QALVSFSEDL PDRWERIAEM VPGRSPKEVL 60 EHYETLVHDV LEIDSGRVEL PSYVDDSGVG WDSASQISFD GCKANNANNS AEAAERKKGK 120 PWSEIEHKLF LVGLKQFGKG DWRSISRNVV VTRTPTQVAS HAQKYFLRQS SVKKERKRSS 180 IHDITTVESN SVSVPADRNW IPPPPPPPGD QGGSFGFQDF GFPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-72 | MYB family protein |