PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G24114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 22779.2 Da PI: 9.9615 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 17 | 69 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr+ lP+ + ++K s a+ +Av++Ik+Lq Ro07_G24114 17 KKMMHRDIERKRRQEMATLYASLRSALPPqS---IKGKRSLADHMNEAVNHIKHLQ 69 6899*************************55...*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MDNNQRYANS TIDDNQKKMM HRDIERKRRQ EMATLYASLR SALPPQSIKG KRSLADHMNE 60 AVNHIKHLQT RIKELGSQRD DLKIQTSSSP DLSGTTALGL AGNLIMSGSS GSSSSLLSVG 120 NCSTSRVAVN PCLGGVEIVI SYGAGDCLEQ QGVVLSRLMQ ILLQQGLTVI SCATTQVNKR 180 LVYTIQSEIW YAKYPRLPTK KILCNKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 30 | ERKRRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 6e-39 | bHLH family protein |