PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G22104

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 442aa MW: 48453.1 Da PI: 10.2114

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G22104	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.3	7.3e-12	156	227	13	86
trihelix 13 arremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 a++ ++ +r+klk+++We+v++++ + + ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Ro07_G22104 156 AYEAKWVLRNRAKLKGHDWEDVARHVssraSCSKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 227 6788899999**************854444455566679**************99997......4699999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MVWQLAVGTK ATNNNSKAEQ VCANRIEAVI FWNSLALLKG SHPNTCSSGD ESTKSFKKGI 60 EGGPKKEAQW RRTGGDGDVL GGGIGMEWVT VPCDRPTTTT TLIGPSGCLG WLHINANSQN 120 NPTTAIKPTC SLSHNSTRNP KKSEKEKFTG SHHLLAYEAK WVLRNRAKLK GHDWEDVARH 180 VSSRASCSKS PKTQTQCKNK IESMKKRYRS ESATADGSSW PLYPRLDLLL RGSGPPPPPT 240 AAAVIAAVAP PPPLPQQPPL PPALAHHSNH ALMLLEPSVP VSPPPQPPPP PPHLATAQNS 300 YGSDGGDRDA KEEGVGMKLS DHASDKNPLE IDSSTPALYS DKEKLRSKRM KRKIEKKTRR 360 RREELEIAES IRWLAEVVVR SEQSRMDTMR EIERMRVEAE AKRGEMDLKR TEIIANTQLE 420 IARIFAAGVG KGVDSSLRIG RS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MVWQLAVGTK ATNNNSKAEQ VCANRIEAVI FWNSLALLKG SHPNTCSSGD ESTKSFKKGI  60
EGGPKKEAQW RRTGGDGDVL GGGIGMEWVT VPCDRPTTTT TLIGPSGCLG WLHINANSQN  120
NPTTAIKPTC SLSHNSTRNP KKSEKEKFTG SHHLLAYEAK WVLRNRAKLK GHDWEDVARH  180
VSSRASCSKS PKTQTQCKNK IESMKKRYRS ESATADGSSW PLYPRLDLLL RGSGPPPPPT  240
AAAVIAAVAP PPPLPQQPPL PPALAHHSNH ALMLLEPSVP VSPPPQPPPP PPHLATAQNS  300
YGSDGGDRDA KEEGVGMKLS DHASDKNPLE IDSSTPALYS DKEKLRSKRM KRKIEKKTRR  360
RREELEIAES IRWLAEVVVR SEQSRMDTMR EIERMRVEAE AKRGEMDLKR TEIIANTQLE  420
IARIFAAGVG KGVDSSLRIG RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-84	Trihelix family protein